Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOT entry

There are 9 chains in PDB entry 8EOT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
D	LEU 2	ALA 1282
E	GLY 27	GLY 109
T	C 1	A 33
N	T 8	G 40
R	A 18	A 30
G	VAL 32	GLY 155
C	ASN 30	ASN 1169

There are108 helices in PDB entry 8EOT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	151	155	Right-handed 310
Helix 5	AA5	A	203	224	Right-handed alpha
Helix 6	AA6	B	29	44	Right-handed alpha
Helix 7	AA7	B	72	81	Right-handed alpha
Helix 8	AA8	B	108	110	Right-handed 310
Helix 9	AA9	B	203	211	Right-handed alpha
Helix 10	AB1	B	215	224	Right-handed alpha
Helix 11	AB2	D	3	7	Right-handed 310
Helix 12	AB3	D	16	24	Right-handed alpha
Helix 13	AB4	D	67	71	Right-handed 310
Helix 14	AB5	D	85	90	Right-handed 310
Helix 15	AB6	D	104	107	Right-handed 310
Helix 16	AB7	D	114	119	Right-handed alpha
Helix 17	AB8	D	121	130	Right-handed alpha
Helix 18	AB9	D	140	146	Right-handed alpha
Helix 19	AC1	D	147	182	Right-handed alpha
Helix 20	AC2	D	190	227	Right-handed alpha
Helix 21	AC3	D	238	248	Right-handed alpha
Helix 22	AC4	D	257	267	Right-handed alpha
Helix 23	AC5	D	269	283	Right-handed alpha
Helix 24	AC6	D	286	296	Right-handed alpha
Helix 25	AC7	D	321	325	Right-handed 310
Helix 26	AC8	D	342	359	Right-handed alpha
Helix 27	AC9	D	363	383	Right-handed alpha
Helix 28	AD1	D	401	406	Right-handed 310
Helix 29	AD2	D	411	416	Right-handed alpha
Helix 30	AD3	D	445	452	Right-handed alpha
Helix 31	AD4	D	452	463	Right-handed alpha
Helix 32	AD5	D	468	478	Right-handed alpha
Helix 33	AD6	D	483	491	Right-handed alpha
Helix 34	AD7	D	505	507	Right-handed 310
Helix 35	AD8	D	525	527	Right-handed 310
Helix 36	AD9	D	528	533	Right-handed alpha
Helix 37	AE1	D	548	558	Right-handed alpha
Helix 38	AE2	D	560	564	Right-handed 310
Helix 39	AE3	D	579	589	Right-handed alpha
Helix 40	AE4	D	614	624	Right-handed alpha
Helix 41	AE5	D	643	651	Right-handed alpha
Helix 42	AE6	D	667	675	Right-handed alpha
Helix 43	AE7	D	689	704	Right-handed alpha
Helix 44	AE8	D	705	725	Right-handed alpha
Helix 45	AE9	D	732	736	Right-handed 310
Helix 46	AF1	D	742	762	Right-handed alpha
Helix 47	AF2	D	766	791	Right-handed alpha
Helix 48	AF3	D	797	805	Right-handed alpha
Helix 49	AF4	D	810	819	Right-handed alpha
Helix 50	AF5	D	845	853	Right-handed alpha
Helix 51	AF6	D	853	881	Right-handed alpha
Helix 52	AF7	D	916	921	Right-handed alpha
Helix 53	AF8	D	945	954	Right-handed alpha
Helix 54	AF9	D	964	968	Right-handed 310
Helix 55	AG1	D	976	980	Right-handed alpha
Helix 56	AG2	D	994	1005	Right-handed alpha
Helix 57	AG3	D	1006	1008	Right-handed 310
Helix 58	AG4	D	1027	1035	Right-handed alpha
Helix 59	AG5	D	1117	1145	Right-handed alpha
Helix 60	AG6	D	1151	1162	Right-handed alpha
Helix 61	AG7	D	1183	1194	Right-handed alpha
Helix 62	AG8	D	1219	1227	Right-handed alpha
Helix 63	AG9	D	1228	1240	Right-handed alpha
Helix 64	AH1	D	1247	1255	Right-handed alpha
Helix 65	AH2	D	1260	1263	Right-handed 310
Helix 66	AH3	D	1264	1269	Right-handed alpha
Helix 67	AH4	D	1275	1282	Right-handed alpha
Helix 68	AH5	E	33	37	Right-handed 310
Helix 69	AH6	E	39	44	Right-handed alpha
Helix 70	AH7	E	49	70	Right-handed alpha
Helix 71	AH8	E	90	101	Right-handed alpha
Helix 72	AH9	G	33	45	Right-handed alpha
Helix 73	AI1	G	58	74	Right-handed alpha
Helix 74	AI2	G	116	125	Right-handed alpha
Helix 75	AI3	G	143	150	Right-handed alpha
Helix 76	AI4	C	54	66	Right-handed alpha
Helix 77	AI5	C	67	77	Right-handed alpha
Helix 78	AI6	C	85	94	Right-handed alpha
Helix 79	AI7	C	118	126	Right-handed alpha
Helix 80	AI8	C	225	229	Right-handed 310
Helix 81	AI9	C	234	242	Right-handed alpha
Helix 82	AJ1	C	244	252	Right-handed alpha
Helix 83	AJ2	C	255	264	Right-handed alpha
Helix 84	AJ3	C	269	282	Right-handed alpha
Helix 85	AJ4	C	288	296	Right-handed alpha
Helix 86	AJ5	C	309	320	Right-handed alpha
Helix 87	AJ6	C	334	351	Right-handed alpha
Helix 88	AJ7	C	380	404	Right-handed alpha
Helix 89	AJ8	C	413	418	Right-handed alpha
Helix 90	AJ9	C	420	432	Right-handed alpha
Helix 91	AK1	C	444	452	Right-handed alpha
Helix 92	AK2	C	532	537	Right-handed alpha
Helix 93	AK3	C	590	594	Right-handed 310
Helix 94	AK4	C	596	600	Right-handed 310
Helix 95	AK5	C	601	612	Right-handed alpha
Helix 96	AK6	C	632	637	Right-handed alpha
Helix 97	AK7	C	739	744	Right-handed alpha
Helix 98	AK8	C	856	858	Right-handed 310
Helix 99	AK9	C	900	904	Right-handed 310
Helix 100	AL1	C	928	943	Right-handed alpha
Helix 101	AL2	C	953	957	Right-handed 310
Helix 102	AL3	C	981	990	Right-handed alpha
Helix 103	AL4	C	1036	1040	Right-handed 310
Helix 104	AL5	C	1069	1080	Right-handed alpha
Helix 105	AL6	C	1081	1090	Right-handed alpha
Helix 106	AL7	C	1097	1109	Right-handed alpha
Helix 107	AL8	C	1118	1131	Right-handed alpha
Helix 108	AL9	C	1156	1160	Right-handed 310

There are 43 sheets in PDB entry 8EOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	171	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	186	198	anti-parallel
Strand 4	B	171	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	253	255	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	422	first strand
Strand 2	C	1066	1068	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	521	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	633	637	parallel
Strand 3	D	662	666	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	963	anti-parallel
Strand 3	D	924	925	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	930	first strand
Strand 2	D	936	938	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1067	1068	first strand
Strand 2	D	1051	1052	anti-parallel
Strand 3	D	1104	1105	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1061	1064	first strand
Strand 2	D	1077	1081	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1089	1090	first strand
Strand 2	D	1096	1097	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1205	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	83	first strand
Strand 2	G	108	113	anti-parallel
Strand 3	G	48	53	anti-parallel
Strand 4	G	131	132	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	93	first strand
Strand 2	G	96	103	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	198	201	anti-parallel
Strand 3	C	215	216	anti-parallel
Strand 4	C	222	224	anti-parallel
Strand 5	C	232	233	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	362	364	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	568	572	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	683	684	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	899	anti-parallel
Strand 5	C	734	738	parallel
Strand 6	C	915	917	anti-parallel
Strand 7	C	717	723	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	760	first strand
Strand 2	C	865	877	anti-parallel
Strand 3	C	845	854	anti-parallel
Strand 4	C	795	796	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOT