Analysis of interatomic Contacts of Structural Units in PDB entry:
8EP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EP7 entry

There are 3 chains in PDB entry 8EP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2MSE 323
B
 MSE 1TRP 325
C
 MSE 1ALA 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8EP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
10 15Right-handed 310
Helix 3
AA3
A
27 38Right-handed alpha
Helix 4
AA4
A
49 58Right-handed alpha
Helix 5
AA5
A
64 71Right-handed alpha
Helix 6
AA6
A
83 92Right-handed alpha
Helix 7
AA7
A
93 96Right-handed 310
Helix 8
AA8
A
107 112Right-handed alpha
Helix 9
AA9
A
131 140Right-handed alpha
Helix 10
AB1
A
158 171Right-handed alpha
Helix 11
AB2
A
171 176Right-handed alpha
Helix 12
AB3
A
181 196Right-handed alpha
Helix 13
AB4
A
198 215Right-handed alpha
Helix 14
AB5
A
218 227Right-handed alpha
Helix 15
AB6
A
227 249Right-handed alpha
Helix 16
AB7
A
250 265Right-handed alpha
Helix 17
AB8
A
266 282Right-handed alpha
Helix 18
AB9
A
283 295Right-handed alpha
Helix 19
AC1
A
297 309Right-handed alpha
Helix 20
AC2
A
310 323Right-handed alpha
Helix 21
AC3
B
25 37Right-handed alpha
Helix 22
AC4
B
49 58Right-handed alpha
Helix 23
AC5
B
64 71Right-handed alpha
Helix 24
AC6
B
80 92Right-handed alpha
Helix 25
AC7
B
93 96Right-handed 310
Helix 26
AC8
B
107 112Right-handed alpha
Helix 27
AC9
B
131 140Right-handed alpha
Helix 28
AD1
B
158 170Right-handed alpha
Helix 29
AD2
B
181 196Right-handed alpha
Helix 30
AD3
B
198 215Right-handed alpha
Helix 31
AD4
B
218 227Right-handed alpha
Helix 32
AD5
B
227 249Right-handed alpha
Helix 33
AD6
B
250 265Right-handed alpha
Helix 34
AD7
B
266 282Right-handed alpha
Helix 35
AD8
B
283 295Right-handed alpha
Helix 36
AD9
B
297 309Right-handed alpha
Helix 37
AE1
B
310 320Right-handed alpha
Helix 38
AE2
C
5 9Right-handed 310
Helix 39
AE3
C
10 15Right-handed 310
Helix 40
AE4
C
25 38Right-handed alpha
Helix 41
AE5
C
49 58Right-handed alpha
Helix 42
AE6
C
64 72Right-handed alpha
Helix 43
AE7
C
80 92Right-handed alpha
Helix 44
AE8
C
93 96Right-handed 310
Helix 45
AE9
C
107 112Right-handed alpha
Helix 46
AF1
C
131 141Right-handed alpha
Helix 47
AF2
C
158 171Right-handed alpha
Helix 48
AF3
C
172 175Right-handed 310
Helix 49
AF4
C
181 196Right-handed alpha
Helix 50
AF5
C
198 215Right-handed alpha
Helix 51
AF6
C
218 227Right-handed alpha
Helix 52
AF7
C
229 249Right-handed alpha
Helix 53
AF8
C
250 265Right-handed alpha
Helix 54
AF9
C
266 282Right-handed alpha
Helix 55
AG1
C
283 295Right-handed alpha
Helix 56
AG2
C
297 309Right-handed alpha
Helix 57
AG3
C
310 321Right-handed alpha
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There are 3 sheets in PDB entry 8EP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
177 179anti-parallel
Strand 3
A
147 153parallel
Strand 4
A
122 128anti-parallel
Strand 5
A
101 104parallel
Strand 6
A
74 77parallel
Strand 7
A
19 22parallel
Strand 8
A
42 45parallel
Strand 9
A
62 63parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
177 179anti-parallel
Strand 3
B
147 153parallel
Strand 4
B
122 127anti-parallel
Strand 5
B
101 104parallel
Strand 6
B
74 77parallel
Strand 7
B
19 22parallel
Strand 8
B
42 45parallel
Strand 9
B
61 63parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
177 179anti-parallel
Strand 3
C
147 153parallel
Strand 4
C
122 128anti-parallel
Strand 5
C
101 104parallel
Strand 6
C
74 77parallel
Strand 7
C
18 22parallel
Strand 8
C
41 45parallel
Strand 9
C
61 63parallel
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