Analysis of interatomic Contacts of Structural Units in PDB entry:
8EPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EPH entry

There are 4 chains in PDB entry 8EPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 47VAL 137
B
 VAL 16THR 245
C
 ASP 47VAL 137
D
 VAL 16THR 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8EPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 54Right-handed 310
Helix 2
AA2
A
90 95Right-handed 310
Helix 3
AA3
B
55 59Right-handed 310
Helix 4
AA4
B
125 133Right-handed alpha
Helix 5
AA5
B
164 171Right-handed alpha
Helix 6
AA6
B
234 243Right-handed alpha
Helix 7
AA7
C
49 54Right-handed 310
Helix 8
AA8
C
90 95Right-handed 310
Helix 9
AA9
C
103 105Right-handed 310
Helix 10
AB1
D
55 59Right-handed 310
Helix 11
AB2
D
125 133Right-handed alpha
Helix 12
AB3
D
164 171Right-handed alpha
Helix 13
AB4
D
234 243Right-handed alpha
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There are 12 sheets in PDB entry 8EPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
68 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
107 110anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
124 126anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 163anti-parallel
Strand 3
B
180 183anti-parallel
Strand 4
B
226 230anti-parallel
Strand 5
B
206 216anti-parallel
Strand 6
B
198 203anti-parallel
Strand 7
B
135 140anti-parallel
Strand 8
B
156 163anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
81 90anti-parallel
Strand 6
B
65 68anti-parallel
Strand 7
B
30 34anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 65first strand
Strand 2
C
68 72anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
84 85anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 101first strand
Strand 2
C
107 110anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 117first strand
Strand 2
C
124 126anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 163anti-parallel
Strand 3
D
180 183anti-parallel
Strand 4
D
226 230anti-parallel
Strand 5
D
206 216anti-parallel
Strand 6
D
198 203anti-parallel
Strand 7
D
135 140anti-parallel
Strand 8
D
156 163anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 34first strand
Strand 2
D
42 48anti-parallel
Strand 3
D
51 54anti-parallel
Strand 4
D
104 108anti-parallel
Strand 5
D
81 90anti-parallel
Strand 6
D
65 68anti-parallel
Strand 7
D
30 34anti-parallel
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