Analysis of interatomic Contacts of Structural Units in PDB entry:
8EPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EPL entry

There are 3 chains in PDB entry 8EPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 85LEU 1851
B
 GLU 38HIS 361
C
 PHE 27GLY 1076
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 8EPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 108Right-handed alpha
Helix 2
AA2
A
118 126Right-handed alpha
Helix 3
AA3
A
127 144Right-handed alpha
Helix 4
AA4
A
158 177Right-handed alpha
Helix 5
AA5
A
192 197Right-handed 310
Helix 6
AA6
A
198 204Right-handed alpha
Helix 7
AA7
A
204 219Right-handed alpha
Helix 8
AA8
A
220 243Right-handed alpha
Helix 9
AA9
A
294 307Right-handed alpha
Helix 10
AB1
A
310 323Right-handed alpha
Helix 11
AB2
A
327 339Right-handed alpha
Helix 12
AB3
A
339 358Right-handed alpha
Helix 13
AB4
A
360 398Right-handed alpha
Helix 14
AB5
A
471 474Right-handed 310
Helix 15
AB6
A
475 494Right-handed alpha
Helix 16
AB7
A
501 525Right-handed alpha
Helix 17
AB8
A
539 561Right-handed alpha
Helix 18
AB9
A
568 583Right-handed 310
Helix 19
AC1
A
585 599Right-handed alpha
Helix 20
AC2
A
600 626Right-handed alpha
Helix 21
AC3
A
642 656Right-handed alpha
Helix 22
AC4
A
658 669Right-handed alpha
Helix 23
AC5
A
671 676Right-handed alpha
Helix 24
AC6
A
679 728Right-handed alpha
Helix 25
AC7
A
776 788Right-handed alpha
Helix 26
AC8
A
1144 1151Right-handed alpha
Helix 27
AC9
A
1155 1172Right-handed alpha
Helix 28
AD1
A
1180 1209Right-handed alpha
Helix 29
AD2
A
1223 1241Right-handed alpha
Helix 30
AD3
A
1251 1259Right-handed alpha
Helix 31
AD4
A
1260 1266Right-handed 310
Helix 32
AD5
A
1267 1272Right-handed alpha
Helix 33
AD6
A
1272 1312Right-handed alpha
Helix 34
AD7
A
1336 1340Right-handed 310
Helix 35
AD8
A
1357 1371Right-handed alpha
Helix 36
AD9
A
1373 1383Right-handed alpha
Helix 37
AE1
A
1396 1398Right-handed 310
Helix 38
AE2
A
1399 1410Right-handed alpha
Helix 39
AE3
A
1413 1425Right-handed alpha
Helix 40
AE4
A
1442 1453Right-handed alpha
Helix 41
AE5
A
1467 1473Right-handed alpha
Helix 42
AE6
A
1477 1496Right-handed alpha
Helix 43
AE7
A
1503 1532Right-handed alpha
Helix 44
AE8
A
1533 1538Right-handed alpha
Helix 45
AE9
A
1540 1560Right-handed alpha
Helix 46
AF1
A
1572 1574Right-handed 310
Helix 47
AF2
A
1575 1581Right-handed alpha
Helix 48
AF3
A
1582 1587Right-handed alpha
Helix 49
AF4
A
1590 1605Right-handed alpha
Helix 50
AF5
A
1609 1630Right-handed alpha
Helix 51
AF6
A
1648 1661Right-handed alpha
Helix 52
AF7
A
1664 1672Right-handed alpha
Helix 53
AF8
A
1698 1723Right-handed alpha
Helix 54
AF9
A
1725 1730Right-handed alpha
Helix 55
AG1
A
1740 1752Right-handed alpha
Helix 56
AG2
A
1766 1771Right-handed alpha
Helix 57
AG3
A
1782 1789Right-handed alpha
Helix 58
AG4
A
1795 1799Right-handed 310
Helix 59
AG5
A
1805 1817Right-handed alpha
Helix 60
AG6
A
1828 1839Right-handed alpha
Helix 61
AG7
B
39 55Right-handed alpha
Helix 62
AG8
B
120 134Right-handed alpha
Helix 63
AG9
B
155 159Right-handed 310
Helix 64
AH1
B
190 208Right-handed alpha
Helix 65
AH2
B
246 263Right-handed alpha
Helix 66
AH3
B
276 281Right-handed 310
Helix 67
AH4
B
297 306Right-handed alpha
Helix 68
AH5
B
308 314Right-handed alpha
Helix 69
AH6
B
314 327Right-handed alpha
Helix 70
AH7
B
329 333Right-handed 310
Helix 71
AH8
B
341 360Right-handed alpha
Helix 72
AH9
C
29 52Right-handed alpha
Helix 73
AI1
C
53 65Right-handed alpha
Helix 74
AI2
C
74 110Right-handed alpha
Helix 75
AI3
C
176 186Right-handed alpha
Helix 76
AI4
C
188 200Right-handed alpha
Helix 77
AI5
C
237 240Right-handed 310
Helix 78
AI6
C
241 249Right-handed alpha
Helix 79
AI7
C
261 265Right-handed 310
Helix 80
AI8
C
266 281Right-handed alpha
Helix 81
AI9
C
311 323Right-handed alpha
Helix 82
AJ1
C
332 344Right-handed alpha
Helix 83
AJ2
C
369 374Right-handed alpha
Helix 84
AJ3
C
396 405Right-handed alpha
Helix 85
AJ4
C
416 423Right-handed alpha
Helix 86
AJ5
C
426 431Right-handed alpha
Helix 87
AJ6
C
431 437Right-handed alpha
Helix 88
AJ7
C
438 442Right-handed 310
Helix 89
AJ8
C
494 500Right-handed alpha
Helix 90
AJ9
C
560 565Right-handed alpha
Helix 91
AK1
C
568 581Right-handed alpha
Helix 92
AK2
C
637 646Right-handed alpha
Helix 93
AK3
C
647 648Right-handed 310
Helix 94
AK4
C
649 653Right-handed 310
Helix 95
AK5
C
678 690Right-handed alpha
Helix 96
AK6
C
698 719Right-handed alpha
Helix 97
AK7
C
745 749Right-handed 310
Helix 98
AK8
C
757 760Right-handed 310
Helix 99
AK9
C
761 770Right-handed alpha
Helix 100
AL1
C
817 827Right-handed alpha
Helix 101
AL2
C
874 879Right-handed alpha
Helix 102
AL3
C
879 889Right-handed alpha
Helix 103
AL4
C
1042 1047Right-handed alpha
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There are 19 sheets in PDB entry 8EPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
279 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1316 1318first strand
Strand 2
A
1348 1350anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1332 1335first strand
Strand 2
A
1342 1345anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
62 66anti-parallel
Strand 5
B
171 174anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
288 292parallel
Strand 3
B
335 337parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
266 268parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 72first strand
Strand 2
C
629 633anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
142 143parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 126first strand
Strand 2
C
165 167parallel
Strand 3
C
215 218anti-parallel
Strand 4
C
206 210anti-parallel
Strand 5
C
484 493anti-parallel
Strand 6
C
458 467anti-parallel
Strand 7
C
445 446anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 126first strand
Strand 2
C
165 167parallel
Strand 3
C
215 218anti-parallel
Strand 4
C
206 210anti-parallel
Strand 5
C
484 493anti-parallel
Strand 6
C
458 467anti-parallel
Strand 7
C
450 451anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
158 159anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 300first strand
Strand 2
C
290 294anti-parallel
Strand 3
C
255 259parallel
Strand 4
C
357 362parallel
Strand 5
C
383 389parallel
Strand 6
C
409 413parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
521 523first strand
Strand 2
C
511 515anti-parallel
Strand 3
C
618 624anti-parallel
Strand 4
C
600 611anti-parallel
Strand 5
C
584 593anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
538 539first strand
Strand 2
C
907 908parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
658 659first strand
Strand 2
C
741 743anti-parallel
Strand 3
C
729 736anti-parallel
Strand 4
C
810 816anti-parallel
Strand 5
C
792 797anti-parallel
Strand 6
C
774 776anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
800 801first strand
Strand 2
C
806 807anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
848 853first strand
Strand 2
C
1014 1019anti-parallel
Strand 3
C
1000 1007anti-parallel
Strand 4
C
989 995anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
892 899first strand
Strand 2
C
976 983anti-parallel
Strand 3
C
1036 1037anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
903 904first strand
Strand 2
C
972 973anti-parallel
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