Analysis of interatomic Contacts of Structural Units in PDB entry:
8EPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EPM entry

There are 2 chains in PDB entry 8EPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 89THR 1730
C
 PHE 27GLY 1076
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 8EPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 107Right-handed alpha
Helix 2
AA2
A
118 127Right-handed alpha
Helix 3
AA3
A
127 144Right-handed alpha
Helix 4
AA4
A
159 175Right-handed alpha
Helix 5
AA5
A
195 197Right-handed 310
Helix 6
AA6
A
198 204Right-handed alpha
Helix 7
AA7
A
204 216Right-handed alpha
Helix 8
AA8
A
218 241Right-handed alpha
Helix 9
AA9
A
294 307Right-handed alpha
Helix 10
AB1
A
310 323Right-handed alpha
Helix 11
AB2
A
326 337Right-handed alpha
Helix 12
AB3
A
339 356Right-handed alpha
Helix 13
AB4
A
475 494Right-handed alpha
Helix 14
AB5
A
501 526Right-handed alpha
Helix 15
AB6
A
542 560Right-handed alpha
Helix 16
AB7
A
568 577Right-handed 310
Helix 17
AB8
A
585 602Right-handed alpha
Helix 18
AB9
A
603 626Right-handed alpha
Helix 19
AC1
A
642 656Right-handed alpha
Helix 20
AC2
A
658 670Right-handed alpha
Helix 21
AC3
A
676 678Right-handed 310
Helix 22
AC4
A
679 708Right-handed alpha
Helix 23
AC5
A
1156 1172Right-handed alpha
Helix 24
AC6
A
1180 1208Right-handed alpha
Helix 25
AC7
A
1222 1241Right-handed alpha
Helix 26
AC8
A
1252 1259Right-handed alpha
Helix 27
AC9
A
1260 1266Right-handed 310
Helix 28
AD1
A
1267 1272Right-handed alpha
Helix 29
AD2
A
1272 1312Right-handed alpha
Helix 30
AD3
A
1336 1340Right-handed 310
Helix 31
AD4
A
1357 1371Right-handed alpha
Helix 32
AD5
A
1373 1383Right-handed alpha
Helix 33
AD6
A
1396 1398Right-handed 310
Helix 34
AD7
A
1399 1425Right-handed alpha
Helix 35
AD8
A
1477 1496Right-handed alpha
Helix 36
AD9
A
1503 1533Right-handed alpha
Helix 37
AE1
A
1533 1538Right-handed alpha
Helix 38
AE2
A
1540 1562Right-handed alpha
Helix 39
AE3
A
1575 1580Right-handed alpha
Helix 40
AE4
A
1581 1587Right-handed alpha
Helix 41
AE5
A
1591 1596Right-handed alpha
Helix 42
AE6
A
1606 1609Right-handed 310
Helix 43
AE7
A
1610 1630Right-handed alpha
Helix 44
AE8
A
1648 1662Right-handed alpha
Helix 45
AE9
A
1664 1672Right-handed alpha
Helix 46
AF1
A
1698 1725Right-handed alpha
Helix 47
AF2
A
1725 1730Right-handed alpha
Helix 48
AF3
C
29 53Right-handed alpha
Helix 49
AF4
C
53 65Right-handed alpha
Helix 50
AF5
C
74 110Right-handed alpha
Helix 51
AF6
C
176 187Right-handed alpha
Helix 52
AF7
C
188 200Right-handed alpha
Helix 53
AF8
C
237 240Right-handed 310
Helix 54
AF9
C
241 249Right-handed alpha
Helix 55
AG1
C
261 265Right-handed 310
Helix 56
AG2
C
266 281Right-handed alpha
Helix 57
AG3
C
311 323Right-handed alpha
Helix 58
AG4
C
332 344Right-handed alpha
Helix 59
AG5
C
369 376Right-handed alpha
Helix 60
AG6
C
396 406Right-handed alpha
Helix 61
AG7
C
416 423Right-handed alpha
Helix 62
AG8
C
425 431Right-handed alpha
Helix 63
AG9
C
431 438Right-handed alpha
Helix 64
AH1
C
439 442Right-handed 310
Helix 65
AH2
C
494 500Right-handed alpha
Helix 66
AH3
C
560 565Right-handed alpha
Helix 67
AH4
C
568 581Right-handed alpha
Helix 68
AH5
C
637 646Right-handed alpha
Helix 69
AH6
C
647 654Right-handed 310
Helix 70
AH7
C
678 690Right-handed alpha
Helix 71
AH8
C
698 719Right-handed alpha
Helix 72
AH9
C
720 723Right-handed 310
Helix 73
AI1
C
745 752Right-handed 310
Helix 74
AI2
C
757 760Right-handed 310
Helix 75
AI3
C
761 770Right-handed alpha
Helix 76
AI4
C
817 827Right-handed alpha
Helix 77
AI5
C
874 878Right-handed 310
Helix 78
AI6
C
879 889Right-handed alpha
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There are 15 sheets in PDB entry 8EPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
279 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1316 1318first strand
Strand 2
A
1348 1350anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1332 1335first strand
Strand 2
A
1342 1345anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
629 632anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
142 143parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 126first strand
Strand 2
C
165 167parallel
Strand 3
C
215 218anti-parallel
Strand 4
C
206 210anti-parallel
Strand 5
C
484 493anti-parallel
Strand 6
C
458 467anti-parallel
Strand 7
C
445 446anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 126first strand
Strand 2
C
165 167parallel
Strand 3
C
215 218anti-parallel
Strand 4
C
206 210anti-parallel
Strand 5
C
484 493anti-parallel
Strand 6
C
458 467anti-parallel
Strand 7
C
450 451anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
158 159anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 300first strand
Strand 2
C
290 294anti-parallel
Strand 3
C
255 259parallel
Strand 4
C
357 362parallel
Strand 5
C
383 389parallel
Strand 6
C
409 413parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
521 523first strand
Strand 2
C
511 515anti-parallel
Strand 3
C
618 624anti-parallel
Strand 4
C
600 611anti-parallel
Strand 5
C
584 593anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
658 659first strand
Strand 2
C
741 743anti-parallel
Strand 3
C
729 736anti-parallel
Strand 4
C
810 816anti-parallel
Strand 5
C
792 797anti-parallel
Strand 6
C
774 776anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
800 801first strand
Strand 2
C
806 807anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
859 861first strand
Strand 2
C
848 853anti-parallel
Strand 3
C
1014 1019anti-parallel
Strand 4
C
1001 1007anti-parallel
Strand 5
C
989 994anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
892 899first strand
Strand 2
C
976 983anti-parallel
Strand 3
C
1036 1037anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
903 904first strand
Strand 2
C
972 973anti-parallel
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