Analysis of interatomic Contacts of Structural Units in PDB entry:
8EPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EPZ entry

There are 4 chains in PDB entry 8EPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7ASP 126
A
 THR 128HIS 575
B
 VAL 8ASP 126
B
 THR 128HIS 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8EPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
19 28Right-handed alpha
Helix 3
AA3
A
29 33Right-handed 310
Helix 4
AA4
A
35 40Right-handed 310
Helix 5
AA5
A
55 59Right-handed 310
Helix 6
AA6
A
60 75Right-handed alpha
Helix 7
AA7
A
95 98Right-handed 310
Helix 8
AA8
A
99 113Right-handed alpha
Helix 9
AA9
A
127 138Right-handed alpha
Helix 10
AB1
A
164 175Right-handed alpha
Helix 11
AB2
A
182 187Right-handed alpha
Helix 12
AB3
A
187 192Right-handed alpha
Helix 13
AB4
A
202 214Right-handed alpha
Helix 14
AB5
A
228 249Right-handed alpha
Helix 15
AB6
A
251 256Right-handed alpha
Helix 16
AB7
A
257 271Right-handed alpha
Helix 17
AB8
A
275 289Right-handed alpha
Helix 18
AB9
A
293 302Right-handed alpha
Helix 19
AC1
A
317 324Right-handed alpha
Helix 20
AC2
A
325 334Right-handed alpha
Helix 21
AC3
A
393 397Right-handed 310
Helix 22
AC4
A
398 401Right-handed 310
Helix 23
AC5
A
413 421Right-handed alpha
Helix 24
AC6
A
456 461Right-handed alpha
Helix 25
AC7
A
490 494Right-handed 310
Helix 26
AC8
A
495 500Right-handed 310
Helix 27
AC9
A
520 528Right-handed alpha
Helix 28
AD1
A
529 531Right-handed 310
Helix 29
AD2
A
540 548Right-handed alpha
Helix 30
AD3
A
559 563Right-handed 310
Helix 31
AD4
B
11 16Right-handed alpha
Helix 32
AD5
B
19 28Right-handed alpha
Helix 33
AD6
B
35 40Right-handed 310
Helix 34
AD7
B
55 59Right-handed 310
Helix 35
AD8
B
60 76Right-handed alpha
Helix 36
AD9
B
95 98Right-handed 310
Helix 37
AE1
B
99 114Right-handed alpha
Helix 38
AE2
B
127 138Right-handed alpha
Helix 39
AE3
B
164 176Right-handed alpha
Helix 40
AE4
B
180 186Right-handed alpha
Helix 41
AE5
B
187 192Right-handed alpha
Helix 42
AE6
B
202 214Right-handed alpha
Helix 43
AE7
B
228 249Right-handed alpha
Helix 44
AE8
B
251 256Right-handed alpha
Helix 45
AE9
B
257 271Right-handed alpha
Helix 46
AF1
B
276 289Right-handed alpha
Helix 47
AF2
B
293 302Right-handed alpha
Helix 48
AF3
B
317 325Right-handed alpha
Helix 49
AF4
B
325 334Right-handed alpha
Helix 50
AF5
B
349 355Right-handed alpha
Helix 51
AF6
B
393 397Right-handed 310
Helix 52
AF7
B
398 401Right-handed 310
Helix 53
AF8
B
413 421Right-handed alpha
Helix 54
AF9
B
456 463Right-handed alpha
Helix 55
AG1
B
490 494Right-handed 310
Helix 56
AG2
B
495 500Right-handed 310
Helix 57
AG3
B
511 513Right-handed 310
Helix 58
AG4
B
520 531Right-handed alpha
Helix 59
AG5
B
540 550Right-handed alpha
Helix 60
AG6
B
552 556Right-handed 310
Helix 61
AG7
B
559 563Right-handed 310
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There are 9 sheets in PDB entry 8EPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
44 49parallel
Strand 3
A
118 123parallel
Strand 4
A
143 147parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
159 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 381first strand
Strand 2
A
390 392anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 406first strand
Strand 2
A
506 509anti-parallel
Strand 3
A
514 517anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
433 436parallel
Strand 3
A
469 471parallel
Strand 4
A
483 484parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
44 49parallel
Strand 3
B
118 123parallel
Strand 4
B
143 147parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
159 161anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 381first strand
Strand 2
B
390 392anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
483 484first strand
Strand 2
B
468 471parallel
Strand 3
B
433 436parallel
Strand 4
B
403 411parallel
Strand 5
B
505 509anti-parallel
Strand 6
B
514 518anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il