Analysis of interatomic Contacts of Structural Units in PDB entry:
8EQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EQN entry

There is 1 chain in PDB entry 8EQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1MET 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8EQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
39 49Right-handed alpha
Helix 3
AA3
A
49 56Right-handed alpha
Helix 4
AA4
A
62 77Right-handed alpha
Helix 5
AA5
A
78 80Right-handed 310
Helix 6
AA6
A
116 120Right-handed 310
Helix 7
AA7
A
121 139Right-handed alpha
Helix 8
AA8
A
142 147Right-handed 310
Helix 9
AA9
A
157 160Right-handed 310
Helix 10
AB1
A
210 226Right-handed alpha
Helix 11
AB2
A
227 233Right-handed alpha
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There are 3 sheets in PDB entry 8EQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 38first strand
Strand 2
A
191 205anti-parallel
Strand 3
A
174 188anti-parallel
Strand 4
A
151 155parallel
Strand 5
A
99 105parallel
Strand 6
A
108 110anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 38first strand
Strand 2
A
191 205anti-parallel
Strand 3
A
174 188anti-parallel
Strand 4
A
151 155parallel
Strand 5
A
99 105parallel
Strand 6
A
113 114anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
91 93anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il