Analysis of interatomic Contacts of Structural Units in PDB entry:
8EQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EQS entry

There are 4 chains in PDB entry 8EQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40VAL 237
B
 SER 40VAL 237
C
 PHE 25ARG 51
D
 PHE 25ARG 51
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8EQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 61Right-handed alpha
Helix 2
AA2
A
67 100Right-handed alpha
Helix 3
AA3
A
105 134Right-handed alpha
Helix 4
AA4
A
136 141Right-handed alpha
Helix 5
AA5
A
219 224Right-handed alpha
Helix 6
AA6
B
43 61Right-handed alpha
Helix 7
AA7
B
67 100Right-handed alpha
Helix 8
AA8
B
105 134Right-handed alpha
Helix 9
AA9
B
136 141Right-handed alpha
Helix 10
AB1
B
219 224Right-handed alpha
Helix 11
AB2
C
26 48Right-handed alpha
Helix 12
AB3
D
26 48Right-handed alpha
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There are 2 sheets in PDB entry 8EQS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
145 150anti-parallel
Strand 3
A
200 204anti-parallel
Strand 4
A
209 218anti-parallel
Strand 5
A
229 235anti-parallel
Strand 6
A
166 172anti-parallel
Strand 7
A
183 186anti-parallel
Strand 8
A
189 192anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
200 204anti-parallel
Strand 4
B
209 218anti-parallel
Strand 5
B
229 235anti-parallel
Strand 6
B
166 172anti-parallel
Strand 7
B
183 186anti-parallel
Strand 8
B
189 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il