Analysis of interatomic Contacts of Structural Units in PDB entry:
8EQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EQV entry

There are 5 chains in PDB entry 8EQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	GLU 412
C	PRO 392	LYS 499
E	TYR 80	ARG 441
D	CYS 14	GLN 730
B	HIS 83	GLN 685

There are 37 helices in PDB entry 8EQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	27	Right-handed alpha
Helix 2	AA2	A	28	30	Right-handed 310
Helix 3	AA3	A	355	362	Right-handed alpha
Helix 4	AA4	A	405	410	Right-handed alpha
Helix 5	AA5	C	399	418	Right-handed alpha
Helix 6	AA6	C	465	468	Right-handed 310
Helix 7	AA7	C	478	480	Right-handed 310
Helix 8	AA8	C	481	486	Right-handed alpha
Helix 9	AA9	E	128	130	Right-handed 310
Helix 10	AB1	E	267	278	Right-handed alpha
Helix 11	AB2	E	281	285	Right-handed 310
Helix 12	AB3	D	15	19	Right-handed alpha
Helix 13	AB4	D	23	61	Right-handed alpha
Helix 14	AB5	D	169	181	Right-handed alpha
Helix 15	AB6	D	219	223	Right-handed 310
Helix 16	AB7	D	224	229	Right-handed alpha
Helix 17	AB8	D	238	247	Right-handed alpha
Helix 18	AB9	D	274	283	Right-handed alpha
Helix 19	AC1	D	328	340	Right-handed alpha
Helix 20	AC2	D	435	448	Right-handed alpha
Helix 21	AC3	D	452	458	Right-handed alpha
Helix 22	AC4	D	462	475	Right-handed alpha
Helix 23	AC5	D	571	576	Right-handed alpha
Helix 24	AC6	D	604	609	Right-handed alpha
Helix 25	AC7	D	647	659	Right-handed alpha
Helix 26	AC8	D	682	686	Right-handed 310
Helix 27	AC9	B	84	90	Right-handed alpha
Helix 28	AD1	B	90	107	Right-handed alpha
Helix 29	AD2	B	111	122	Right-handed 310
Helix 30	AD3	B	133	147	Right-handed alpha
Helix 31	AD4	B	459	471	Right-handed alpha
Helix 32	AD5	B	589	601	Right-handed alpha
Helix 33	AD6	B	607	625	Right-handed alpha
Helix 34	AD7	B	630	643	Right-handed alpha
Helix 35	AD8	B	643	651	Right-handed alpha
Helix 36	AD9	B	652	666	Right-handed alpha
Helix 37	AE1	B	670	685	Right-handed alpha

There are 23 sheets in PDB entry 8EQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	39	first strand
Strand 2	A	398	404	anti-parallel
Strand 3	A	389	394	anti-parallel
Strand 4	A	377	382	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	62	69	anti-parallel
Strand 3	A	77	86	anti-parallel
Strand 4	A	115	123	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	140	143	anti-parallel
Strand 3	A	149	152	anti-parallel
Strand 4	A	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	221	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	267	270	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	288	293	anti-parallel
Strand 3	A	298	302	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	325	first strand
Strand 2	A	333	337	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	431	first strand
Strand 2	C	472	476	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	C	445	449	anti-parallel
Strand 3	C	434	440	anti-parallel
Strand 4	B	313	318	anti-parallel
Strand 5	B	354	360	anti-parallel
Strand 6	B	158	165	anti-parallel
Strand 7	B	230	232	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	413	418	first strand
Strand 2	E	424	429	anti-parallel
Strand 3	E	433	439	anti-parallel
Strand 4	E	82	89	anti-parallel
Strand 5	D	82	87	anti-parallel
Strand 6	D	94	97	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	101	first strand
Strand 2	E	112	116	anti-parallel
Strand 3	E	120	127	anti-parallel
Strand 4	E	131	139	anti-parallel
Strand 5	D	99	100	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	154	first strand
Strand 2	E	161	167	anti-parallel
Strand 3	E	171	176	anti-parallel
Strand 4	E	181	187	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	198	first strand
Strand 2	E	205	210	anti-parallel
Strand 3	E	215	219	anti-parallel
Strand 4	E	224	229	anti-parallel
Strand 5	E	292	294	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	244	first strand
Strand 2	E	250	255	anti-parallel
Strand 3	E	260	264	anti-parallel
Strand 4	E	299	301	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	309	315	first strand
Strand 2	E	318	323	anti-parallel
Strand 3	E	327	333	anti-parallel
Strand 4	E	350	357	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	368	370	first strand
Strand 2	E	376	379	anti-parallel
Strand 3	E	387	390	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	680	681	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	644	646	parallel
Strand 3	D	674	676	anti-parallel
Strand 4	D	666	668	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	614	618	first strand
Strand 2	D	624	628	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	637	640	first strand
Strand 2	D	705	712	anti-parallel
Strand 3	D	695	702	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	207	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	245	247	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	207	first strand
Strand 2	B	186	192	anti-parallel
Strand 3	B	249	252	anti-parallel
Strand 4	B	297	300	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	429	434	anti-parallel
Strand 3	B	486	489	parallel
Strand 4	B	477	479	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EQV