Analysis of interatomic Contacts of Structural Units in PDB entry:
8EQW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EQW entry

There are 16 chains in PDB entry 8EQW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 6	THR 210
A	TRP 212	GLY 432
B	PHE 6	THR 210
B	TRP 212	TYR 431
C	GLN 7	THR 210
C	TRP 212	GLY 432
D	PHE 6	THR 210
D	TRP 212	GLY 432
E	GLN 7	THR 210
E	TRP 212	GLY 432
F	GLN 7	THR 210
F	TRP 212	GLY 432
G	PHE 6	THR 210
G	TRP 212	GLY 432
H	GLN 7	THR 210
H	TRP 212	GLY 432

There are165 helices in PDB entry 8EQW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	16	Right-handed alpha
Helix 2	AA2	A	41	50	Right-handed alpha
Helix 3	AA3	A	63	78	Right-handed alpha
Helix 4	AA4	A	87	100	Right-handed alpha
Helix 5	AA5	A	113	122	Right-handed alpha
Helix 6	AA6	A	122	127	Right-handed alpha
Helix 7	AA7	A	138	146	Right-handed alpha
Helix 8	AA8	A	167	178	Right-handed alpha
Helix 9	AA9	A	187	190	Right-handed 310
Helix 10	AB1	A	196	201	Right-handed 310
Helix 11	AB2	A	239	243	Right-handed 310
Helix 12	AB3	A	253	259	Right-handed alpha
Helix 13	AB4	A	261	270	Right-handed alpha
Helix 14	AB5	A	270	276	Right-handed alpha
Helix 15	AB6	A	280	292	Right-handed alpha
Helix 16	AB7	A	293	314	Right-handed alpha
Helix 17	AB8	A	331	339	Right-handed alpha
Helix 18	AB9	A	356	364	Right-handed alpha
Helix 19	AC1	A	383	387	Right-handed 310
Helix 20	AC2	A	396	400	Right-handed alpha
Helix 21	AC3	A	415	432	Right-handed alpha
Helix 22	AC4	B	8	16	Right-handed alpha
Helix 23	AC5	B	41	50	Right-handed alpha
Helix 24	AC6	B	63	78	Right-handed alpha
Helix 25	AC7	B	87	100	Right-handed alpha
Helix 26	AC8	B	113	122	Right-handed alpha
Helix 27	AC9	B	123	128	Right-handed 310
Helix 28	AD1	B	138	146	Right-handed alpha
Helix 29	AD2	B	167	178	Right-handed alpha
Helix 30	AD3	B	187	190	Right-handed 310
Helix 31	AD4	B	196	201	Right-handed 310
Helix 32	AD5	B	239	243	Right-handed 310
Helix 33	AD6	B	253	259	Right-handed alpha
Helix 34	AD7	B	261	270	Right-handed alpha
Helix 35	AD8	B	270	275	Right-handed alpha
Helix 36	AD9	B	280	292	Right-handed alpha
Helix 37	AE1	B	293	314	Right-handed alpha
Helix 38	AE2	B	331	339	Right-handed alpha
Helix 39	AE3	B	356	364	Right-handed alpha
Helix 40	AE4	B	415	431	Right-handed alpha
Helix 41	AE5	C	8	16	Right-handed alpha
Helix 42	AE6	C	41	50	Right-handed alpha
Helix 43	AE7	C	63	78	Right-handed alpha
Helix 44	AE8	C	87	100	Right-handed alpha
Helix 45	AE9	C	113	122	Right-handed alpha
Helix 46	AF1	C	122	127	Right-handed alpha
Helix 47	AF2	C	138	146	Right-handed alpha
Helix 48	AF3	C	167	178	Right-handed alpha
Helix 49	AF4	C	187	190	Right-handed 310
Helix 50	AF5	C	196	201	Right-handed 310
Helix 51	AF6	C	232	236	Right-handed 310
Helix 52	AF7	C	239	243	Right-handed 310
Helix 53	AF8	C	246	250	Right-handed 310
Helix 54	AF9	C	253	259	Right-handed alpha
Helix 55	AG1	C	261	270	Right-handed alpha
Helix 56	AG2	C	270	276	Right-handed alpha
Helix 57	AG3	C	280	292	Right-handed alpha
Helix 58	AG4	C	293	314	Right-handed alpha
Helix 59	AG5	C	331	339	Right-handed alpha
Helix 60	AG6	C	356	365	Right-handed alpha
Helix 61	AG7	C	415	432	Right-handed alpha
Helix 62	AG8	D	8	16	Right-handed alpha
Helix 63	AG9	D	41	50	Right-handed alpha
Helix 64	AH1	D	63	78	Right-handed alpha
Helix 65	AH2	D	87	100	Right-handed alpha
Helix 66	AH3	D	113	122	Right-handed alpha
Helix 67	AH4	D	122	127	Right-handed alpha
Helix 68	AH5	D	138	146	Right-handed alpha
Helix 69	AH6	D	167	178	Right-handed alpha
Helix 70	AH7	D	187	190	Right-handed 310
Helix 71	AH8	D	196	201	Right-handed 310
Helix 72	AH9	D	239	243	Right-handed 310
Helix 73	AI1	D	246	250	Right-handed 310
Helix 74	AI2	D	253	259	Right-handed alpha
Helix 75	AI3	D	261	270	Right-handed alpha
Helix 76	AI4	D	270	276	Right-handed alpha
Helix 77	AI5	D	280	292	Right-handed alpha
Helix 78	AI6	D	293	314	Right-handed alpha
Helix 79	AI7	D	331	339	Right-handed alpha
Helix 80	AI8	D	355	365	Right-handed alpha
Helix 81	AI9	D	383	387	Right-handed 310
Helix 82	AJ1	D	415	432	Right-handed alpha
Helix 83	AJ2	E	8	16	Right-handed alpha
Helix 84	AJ3	E	41	50	Right-handed alpha
Helix 85	AJ4	E	63	78	Right-handed alpha
Helix 86	AJ5	E	87	100	Right-handed alpha
Helix 87	AJ6	E	113	122	Right-handed alpha
Helix 88	AJ7	E	122	127	Right-handed alpha
Helix 89	AJ8	E	138	146	Right-handed alpha
Helix 90	AJ9	E	167	178	Right-handed alpha
Helix 91	AK1	E	187	190	Right-handed 310
Helix 92	AK2	E	196	201	Right-handed 310
Helix 93	AK3	E	239	243	Right-handed 310
Helix 94	AK4	E	246	250	Right-handed 310
Helix 95	AK5	E	253	259	Right-handed alpha
Helix 96	AK6	E	261	270	Right-handed alpha
Helix 97	AK7	E	270	276	Right-handed alpha
Helix 98	AK8	E	280	292	Right-handed alpha
Helix 99	AK9	E	293	315	Right-handed alpha
Helix 100	AL1	E	331	339	Right-handed alpha
Helix 101	AL2	E	356	365	Right-handed alpha
Helix 102	AL3	E	383	387	Right-handed 310
Helix 103	AL4	E	393	400	Right-handed alpha
Helix 104	AL5	E	415	432	Right-handed alpha
Helix 105	AL6	F	8	16	Right-handed alpha
Helix 106	AL7	F	41	50	Right-handed alpha
Helix 107	AL8	F	63	78	Right-handed alpha
Helix 108	AL9	F	87	100	Right-handed alpha
Helix 109	AM1	F	113	122	Right-handed alpha
Helix 110	AM2	F	122	127	Right-handed alpha
Helix 111	AM3	F	138	146	Right-handed alpha
Helix 112	AM4	F	167	178	Right-handed alpha
Helix 113	AM5	F	187	190	Right-handed 310
Helix 114	AM6	F	196	201	Right-handed 310
Helix 115	AM7	F	239	243	Right-handed 310
Helix 116	AM8	F	246	250	Right-handed 310
Helix 117	AM9	F	253	259	Right-handed alpha
Helix 118	AN1	F	261	270	Right-handed alpha
Helix 119	AN2	F	270	276	Right-handed alpha
Helix 120	AN3	F	280	292	Right-handed alpha
Helix 121	AN4	F	293	314	Right-handed alpha
Helix 122	AN5	F	331	339	Right-handed alpha
Helix 123	AN6	F	356	365	Right-handed alpha
Helix 124	AN7	F	383	387	Right-handed 310
Helix 125	AN8	F	394	400	Right-handed alpha
Helix 126	AN9	F	415	432	Right-handed alpha
Helix 127	AO1	G	8	16	Right-handed alpha
Helix 128	AO2	G	41	50	Right-handed alpha
Helix 129	AO3	G	63	78	Right-handed alpha
Helix 130	AO4	G	87	100	Right-handed alpha
Helix 131	AO5	G	113	122	Right-handed alpha
Helix 132	AO6	G	123	128	Right-handed 310
Helix 133	AO7	G	138	146	Right-handed alpha
Helix 134	AO8	G	167	178	Right-handed alpha
Helix 135	AO9	G	187	190	Right-handed 310
Helix 136	AP1	G	196	201	Right-handed 310
Helix 137	AP2	G	239	243	Right-handed 310
Helix 138	AP3	G	253	259	Right-handed alpha
Helix 139	AP4	G	261	270	Right-handed alpha
Helix 140	AP5	G	270	276	Right-handed alpha
Helix 141	AP6	G	280	292	Right-handed alpha
Helix 142	AP7	G	293	314	Right-handed alpha
Helix 143	AP8	G	331	339	Right-handed alpha
Helix 144	AP9	G	356	365	Right-handed alpha
Helix 145	AQ1	G	415	432	Right-handed alpha
Helix 146	AQ2	H	8	16	Right-handed alpha
Helix 147	AQ3	H	41	50	Right-handed alpha
Helix 148	AQ4	H	63	78	Right-handed alpha
Helix 149	AQ5	H	87	100	Right-handed alpha
Helix 150	AQ6	H	113	122	Right-handed alpha
Helix 151	AQ7	H	122	127	Right-handed alpha
Helix 152	AQ8	H	138	146	Right-handed alpha
Helix 153	AQ9	H	167	178	Right-handed alpha
Helix 154	AR1	H	187	190	Right-handed 310
Helix 155	AR2	H	196	201	Right-handed 310
Helix 156	AR3	H	239	243	Right-handed 310
Helix 157	AR4	H	253	259	Right-handed alpha
Helix 158	AR5	H	261	270	Right-handed alpha
Helix 159	AR6	H	270	275	Right-handed alpha
Helix 160	AR7	H	280	292	Right-handed alpha
Helix 161	AR8	H	293	314	Right-handed alpha
Helix 162	AR9	H	331	339	Right-handed alpha
Helix 163	AS1	H	356	365	Right-handed alpha
Helix 164	AS2	H	393	400	Right-handed alpha
Helix 165	AS3	H	415	432	Right-handed alpha

There are 16 sheets in PDB entry 8EQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	85	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	A	204	208	anti-parallel
Strand 4	A	182	185	parallel
Strand 5	A	150	156	parallel
Strand 6	A	105	109	parallel
Strand 7	A	130	134	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	346	351	anti-parallel
Strand 3	A	406	410	anti-parallel
Strand 4	A	380	382	anti-parallel
Strand 5	A	369	370	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	222	226	anti-parallel
Strand 3	B	204	208	anti-parallel
Strand 4	B	182	185	parallel
Strand 5	B	150	156	parallel
Strand 6	B	105	109	parallel
Strand 7	B	130	134	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	346	351	anti-parallel
Strand 3	B	406	410	anti-parallel
Strand 4	B	380	382	anti-parallel
Strand 5	B	369	370	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	85	first strand
Strand 2	C	222	226	anti-parallel
Strand 3	C	204	208	anti-parallel
Strand 4	C	182	185	parallel
Strand 5	C	150	156	parallel
Strand 6	C	105	109	parallel
Strand 7	C	130	134	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	322	first strand
Strand 2	C	346	351	anti-parallel
Strand 3	C	406	410	anti-parallel
Strand 4	C	380	382	anti-parallel
Strand 5	C	369	370	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	85	first strand
Strand 2	D	222	226	anti-parallel
Strand 3	D	204	208	anti-parallel
Strand 4	D	182	185	parallel
Strand 5	D	150	156	parallel
Strand 6	D	105	109	parallel
Strand 7	D	130	134	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	346	351	anti-parallel
Strand 3	D	406	410	anti-parallel
Strand 4	D	380	382	anti-parallel
Strand 5	D	369	370	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	85	first strand
Strand 2	E	222	226	anti-parallel
Strand 3	E	204	208	anti-parallel
Strand 4	E	182	185	parallel
Strand 5	E	150	156	parallel
Strand 6	E	105	109	parallel
Strand 7	E	130	134	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	322	first strand
Strand 2	E	346	351	anti-parallel
Strand 3	E	406	410	anti-parallel
Strand 4	E	380	382	anti-parallel
Strand 5	E	369	370	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	85	first strand
Strand 2	F	222	226	anti-parallel
Strand 3	F	204	208	anti-parallel
Strand 4	F	182	185	parallel
Strand 5	F	150	156	parallel
Strand 6	F	105	109	parallel
Strand 7	F	130	134	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	318	322	first strand
Strand 2	F	346	351	anti-parallel
Strand 3	F	406	410	anti-parallel
Strand 4	F	380	382	anti-parallel
Strand 5	F	369	370	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	85	first strand
Strand 2	G	222	226	anti-parallel
Strand 3	G	204	208	anti-parallel
Strand 4	G	182	185	parallel
Strand 5	G	150	156	parallel
Strand 6	G	105	109	parallel
Strand 7	G	130	134	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	318	322	first strand
Strand 2	G	346	351	anti-parallel
Strand 3	G	406	410	anti-parallel
Strand 4	G	380	382	anti-parallel
Strand 5	G	369	370	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	85	first strand
Strand 2	H	222	226	anti-parallel
Strand 3	H	204	208	anti-parallel
Strand 4	H	182	185	parallel
Strand 5	H	150	156	parallel
Strand 6	H	105	109	parallel
Strand 7	H	130	134	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	318	322	first strand
Strand 2	H	346	351	anti-parallel
Strand 3	H	406	410	anti-parallel
Strand 4	H	380	382	anti-parallel
Strand 5	H	369	370	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EQW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EQW