Analysis of interatomic Contacts of Structural Units in PDB entry:
8ER5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ER5 entry

There are 2 chains in PDB entry 8ER5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 289PRO 414
B
 LEU 290PRO 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8ER5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
295 308Right-handed alpha
Helix 2
AA2
A
324 336Right-handed alpha
Helix 3
AA3
A
343 348Right-handed alpha
Helix 4
AA4
A
355 359Right-handed 310
Helix 5
AA5
A
397 404Right-handed alpha
Helix 6
AA6
B
295 308Right-handed alpha
Helix 7
AA7
B
324 336Right-handed alpha
Helix 8
AA8
B
343 348Right-handed alpha
Helix 9
AA9
B
355 359Right-handed 310
Helix 10
AB1
B
369 371Right-handed 310
Helix 11
AB2
B
397 404Right-handed alpha
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There are 4 sheets in PDB entry 8ER5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
322 323anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
364 367anti-parallel
Strand 4
A
373 378anti-parallel
Strand 5
A
381 385anti-parallel
Strand 6
A
392 396anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
322 323anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
364 367anti-parallel
Strand 4
B
373 378anti-parallel
Strand 5
B
381 385anti-parallel
Strand 6
B
392 396anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il