Analysis of interatomic Contacts of Structural Units in PDB entry:
8ERI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ERI entry

There are 3 chains in PDB entry 8ERI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1PRO 207
B
 PRO 1PRO 207
C
 PRO 1PRO 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8ERI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
34 49Right-handed alpha
Helix 3
AA3
A
51 63Right-handed alpha
Helix 4
AA4
A
64 86Right-handed alpha
Helix 5
AA5
A
96 102Right-handed alpha
Helix 6
AA6
A
106 120Right-handed alpha
Helix 7
AA7
A
121 124Right-handed 310
Helix 8
AA8
A
131 135Right-handed 310
Helix 9
AA9
A
143 159Right-handed alpha
Helix 10
AB1
A
165 176Right-handed alpha
Helix 11
AB2
A
180 184Right-handed 310
Helix 12
AB3
A
194 203Right-handed alpha
Helix 13
AB4
B
16 28Right-handed alpha
Helix 14
AB5
B
34 49Right-handed alpha
Helix 15
AB6
B
51 63Right-handed alpha
Helix 16
AB7
B
64 86Right-handed alpha
Helix 17
AB8
B
96 102Right-handed alpha
Helix 18
AB9
B
106 121Right-handed alpha
Helix 19
AC1
B
122 124Right-handed 310
Helix 20
AC2
B
131 136Right-handed alpha
Helix 21
AC3
B
143 159Right-handed alpha
Helix 22
AC4
B
165 176Right-handed alpha
Helix 23
AC5
B
178 185Right-handed alpha
Helix 24
AC6
B
197 201Right-handed 310
Helix 25
AC7
C
16 28Right-handed alpha
Helix 26
AC8
C
34 49Right-handed alpha
Helix 27
AC9
C
51 63Right-handed alpha
Helix 28
AD1
C
64 86Right-handed alpha
Helix 29
AD2
C
96 101Right-handed alpha
Helix 30
AD3
C
106 120Right-handed alpha
Helix 31
AD4
C
121 124Right-handed 310
Helix 32
AD5
C
131 135Right-handed 310
Helix 33
AD6
C
144 157Right-handed alpha
Helix 34
AD7
C
165 174Right-handed alpha
Helix 35
AD8
C
175 177Right-handed 310
Helix 36
AD9
C
178 183Right-handed alpha
Helix 37
AE1
C
194 200Right-handed alpha
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There are 3 sheets in PDB entry 8ERI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
11 12anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
11 12anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
11 12anti-parallel
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