Analysis of interatomic Contacts of Structural Units in PDB entry:
8ERM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ERM entry

There are 2 chains in PDB entry 8ERM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 180ASN 378
B
 GLY 178SER 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 8ERM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
217 226Right-handed alpha
Helix 2
AA2
A
270 281Right-handed alpha
Helix 3
AA3
A
281 286Right-handed alpha
Helix 4
AA4
A
372 377Right-handed alpha
Helix 5
AA5
B
217 226Right-handed alpha
Helix 6
AA6
B
270 281Right-handed alpha
Helix 7
AA7
B
281 286Right-handed alpha
Helix 8
AA8
B
372 377Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8ERM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
350 352anti-parallel
Strand 3
A
307 309anti-parallel
Strand 4
A
252 258anti-parallel
Strand 5
A
261 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 212first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
363 366anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
297 301anti-parallel
Strand 3
A
233 248anti-parallel
Strand 4
A
318 325anti-parallel
Strand 5
A
337 341anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
297 301anti-parallel
Strand 3
A
233 248anti-parallel
Strand 4
A
354 358anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
350 352anti-parallel
Strand 3
B
307 309anti-parallel
Strand 4
B
252 258anti-parallel
Strand 5
B
261 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 212first strand
Strand 2
B
197 203anti-parallel
Strand 3
B
363 366anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
297 301anti-parallel
Strand 3
B
233 248anti-parallel
Strand 4
B
318 325anti-parallel
Strand 5
B
337 341anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 291first strand
Strand 2
B
297 301anti-parallel
Strand 3
B
233 248anti-parallel
Strand 4
B
354 358anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il