Analysis of interatomic Contacts of Structural Units in PDB entry:
8ERP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ERP entry

There are 2 chains in PDB entry 8ERP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 20ARG 383
A
 PRO 20ARG 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 8ERP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
22 30Right-handed alpha
Helix 2
AA2
B
42 55Right-handed alpha
Helix 3
AA3
B
62 85Right-handed alpha
Helix 4
AA4
B
86 89Right-handed 310
Helix 5
AA5
B
93 120Right-handed alpha
Helix 6
AA6
B
125 152Right-handed alpha
Helix 7
AA7
B
156 159Right-handed 310
Helix 8
AA8
B
160 180Right-handed alpha
Helix 9
AA9
B
190 209Right-handed alpha
Helix 10
AB1
B
210 215Right-handed 310
Helix 11
AB2
B
225 249Right-handed alpha
Helix 12
AB3
B
266 284Right-handed alpha
Helix 13
AB4
B
288 293Right-handed alpha
Helix 14
AB5
B
293 318Right-handed alpha
Helix 15
AB6
B
329 341Right-handed alpha
Helix 16
AB7
B
348 378Right-handed alpha
Helix 17
AB8
A
22 30Right-handed alpha
Helix 18
AB9
A
42 55Right-handed alpha
Helix 19
AC1
A
62 85Right-handed alpha
Helix 20
AC2
A
86 89Right-handed 310
Helix 21
AC3
A
93 120Right-handed alpha
Helix 22
AC4
A
125 152Right-handed alpha
Helix 23
AC5
A
156 159Right-handed 310
Helix 24
AC6
A
160 180Right-handed alpha
Helix 25
AC7
A
190 209Right-handed alpha
Helix 26
AC8
A
210 215Right-handed 310
Helix 27
AC9
A
225 249Right-handed alpha
Helix 28
AD1
A
266 284Right-handed alpha
Helix 29
AD2
A
288 293Right-handed alpha
Helix 30
AD3
A
293 318Right-handed alpha
Helix 31
AD4
A
329 341Right-handed alpha
Helix 32
AD5
A
348 378Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8ERP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
184 186parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
184 186parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il