Analysis of interatomic Contacts of Structural Units in PDB entry:
8ES4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ES4 entry

There are 8 chains in PDB entry 8ES4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	GLN 487
C	ARG 2	GLY 182
E	PHE 5	ARG 776
G	TYR 3	ARG 147
H	TYR 3	SER 145
F	SER 4	VAL 148
B	GLU 7	GLN 487
D	ARG 2	GLY 182

There are 81 helices in PDB entry 8ES4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	17	Right-handed alpha
Helix 2	AA2	A	18	33	Right-handed alpha
Helix 3	AA3	A	40	45	Right-handed 310
Helix 4	AA4	A	57	75	Right-handed alpha
Helix 5	AA5	A	87	95	Right-handed alpha
Helix 6	AA6	A	102	116	Right-handed alpha
Helix 7	AA7	A	117	120	Right-handed 310
Helix 8	AA8	A	122	137	Right-handed alpha
Helix 9	AA9	A	181	183	Right-handed 310
Helix 10	AB1	A	184	191	Right-handed alpha
Helix 11	AB2	A	255	258	Right-handed 310
Helix 12	AB3	A	259	282	Right-handed alpha
Helix 13	AB4	A	290	292	Right-handed 310
Helix 14	AB5	A	294	299	Right-handed alpha
Helix 15	AB6	A	329	348	Right-handed alpha
Helix 16	AB7	A	377	400	Right-handed alpha
Helix 17	AB8	A	401	408	Right-handed alpha
Helix 18	AB9	A	420	423	Right-handed 310
Helix 19	AC1	A	424	450	Right-handed alpha
Helix 20	AC2	A	454	467	Right-handed alpha
Helix 21	AC3	A	469	473	Right-handed 310
Helix 22	AC4	A	476	486	Right-handed alpha
Helix 23	AC5	C	3	14	Right-handed alpha
Helix 24	AC6	C	29	46	Right-handed alpha
Helix 25	AC7	C	118	138	Right-handed alpha
Helix 26	AC8	C	141	166	Right-handed alpha
Helix 27	AC9	C	173	182	Right-handed alpha
Helix 28	AD1	E	105	109	Right-handed 310
Helix 29	AD2	E	146	148	Right-handed 310
Helix 30	AD3	E	190	193	Right-handed 310
Helix 31	AD4	E	194	210	Right-handed alpha
Helix 32	AD5	E	212	214	Right-handed 310
Helix 33	AD6	E	252	256	Right-handed 310
Helix 34	AD7	E	334	339	Right-handed alpha
Helix 35	AD8	E	487	491	Right-handed 310
Helix 36	AD9	E	527	529	Right-handed 310
Helix 37	AE1	E	604	608	Right-handed 310
Helix 38	AE2	E	612	614	Right-handed 310
Helix 39	AE3	E	704	707	Right-handed 310
Helix 40	AE4	G	25	27	Right-handed 310
Helix 41	AE5	G	39	43	Right-handed 310
Helix 42	AE6	G	85	103	Right-handed alpha
Helix 43	AE7	G	137	146	Right-handed alpha
Helix 44	AE8	H	25	27	Right-handed 310
Helix 45	AE9	H	39	41	Right-handed 310
Helix 46	AF1	H	86	106	Right-handed alpha
Helix 47	AF2	H	137	145	Right-handed alpha
Helix 48	AF3	F	25	29	Right-handed 310
Helix 49	AF4	F	39	41	Right-handed 310
Helix 50	AF5	F	77	81	Right-handed 310
Helix 51	AF6	F	85	106	Right-handed alpha
Helix 52	AF7	F	137	148	Right-handed alpha
Helix 53	AF8	B	8	17	Right-handed alpha
Helix 54	AF9	B	18	32	Right-handed alpha
Helix 55	AG1	B	41	45	Right-handed 310
Helix 56	AG2	B	57	75	Right-handed alpha
Helix 57	AG3	B	87	96	Right-handed alpha
Helix 58	AG4	B	102	117	Right-handed alpha
Helix 59	AG5	B	118	120	Right-handed 310
Helix 60	AG6	B	122	137	Right-handed alpha
Helix 61	AG7	B	155	157	Right-handed 310
Helix 62	AG8	B	181	183	Right-handed 310
Helix 63	AG9	B	184	191	Right-handed alpha
Helix 64	AH1	B	232	236	Right-handed 310
Helix 65	AH2	B	255	258	Right-handed 310
Helix 66	AH3	B	259	282	Right-handed alpha
Helix 67	AH4	B	294	299	Right-handed alpha
Helix 68	AH5	B	324	328	Right-handed 310
Helix 69	AH6	B	329	348	Right-handed alpha
Helix 70	AH7	B	377	400	Right-handed alpha
Helix 71	AH8	B	403	408	Right-handed alpha
Helix 72	AH9	B	420	423	Right-handed 310
Helix 73	AI1	B	424	450	Right-handed alpha
Helix 74	AI2	B	454	467	Right-handed alpha
Helix 75	AI3	B	470	474	Right-handed 310
Helix 76	AI4	B	476	486	Right-handed alpha
Helix 77	AI5	D	3	15	Right-handed alpha
Helix 78	AI6	D	26	44	Right-handed alpha
Helix 79	AI7	D	118	139	Right-handed alpha
Helix 80	AI8	D	141	166	Right-handed alpha
Helix 81	AI9	D	173	180	Right-handed alpha

There are 37 sheets in PDB entry 8ES4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	416	418	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	139	144	anti-parallel
Strand 3	A	238	242	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	163	first strand
Strand 2	A	169	179	anti-parallel
Strand 3	A	200	209	anti-parallel
Strand 4	A	214	220	anti-parallel
Strand 5	A	223	231	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	285	288	anti-parallel
Strand 3	B	306	309	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	72	77	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	89	92	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	762	770	anti-parallel
Strand 3	E	683	694	anti-parallel
Strand 4	E	732	744	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	660	663	anti-parallel
Strand 3	E	749	754	anti-parallel
Strand 4	E	696	703	anti-parallel
Strand 5	E	708	715	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	42	45	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	567	571	anti-parallel
Strand 3	E	555	559	anti-parallel
Strand 4	E	545	550	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	73	first strand
Strand 2	E	76	83	anti-parallel
Strand 3	E	88	92	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	122	first strand
Strand 2	E	125	130	anti-parallel
Strand 3	E	307	309	anti-parallel
Strand 4	E	315	316	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	138	first strand
Strand 2	E	301	303	anti-parallel
Strand 3	E	320	321	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	218	first strand
Strand 2	E	222	226	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	242	244	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	181	first strand
Strand 2	E	162	169	anti-parallel
Strand 3	E	232	234	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	250	first strand
Strand 2	E	268	271	parallel
Strand 3	E	280	284	anti-parallel
Strand 4	E	289	292	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	345	347	first strand
Strand 2	E	352	354	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	362	first strand
Strand 2	E	385	388	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	402	first strand
Strand 2	E	407	411	anti-parallel
Strand 3	E	415	418	anti-parallel
Strand 4	E	432	435	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	446	448	first strand
Strand 2	E	451	459	anti-parallel
Strand 3	E	462	470	anti-parallel
Strand 4	E	478	482	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	501	first strand
Strand 2	E	506	511	anti-parallel
Strand 3	E	517	525	anti-parallel
Strand 4	E	531	535	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	501	first strand
Strand 2	E	506	511	anti-parallel
Strand 3	E	517	525	anti-parallel
Strand 4	E	538	540	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	589	596	first strand
Strand 2	E	650	656	anti-parallel
Strand 3	E	616	619	anti-parallel
Strand 4	E	629	630	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	600	602	first strand
Strand 2	E	640	643	anti-parallel
Strand 3	E	632	635	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	65	67	anti-parallel
Strand 3	G	29	33	anti-parallel
Strand 4	G	36	37	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	47	first strand
Strand 2	G	50	52	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	121	first strand
Strand 2	F	124	126	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	8	first strand
Strand 2	H	63	67	anti-parallel
Strand 3	H	29	33	anti-parallel
Strand 4	H	36	38	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	17	first strand
Strand 2	H	50	53	anti-parallel
Strand 3	H	43	47	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	10	first strand
Strand 2	F	61	64	anti-parallel
Strand 3	F	32	33	anti-parallel
Strand 4	F	36	37	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	17	first strand
Strand 2	F	50	53	anti-parallel
Strand 3	F	43	47	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	416	418	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	139	144	anti-parallel
Strand 3	B	238	242	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	163	first strand
Strand 2	B	169	179	anti-parallel
Strand 3	B	200	209	anti-parallel
Strand 4	B	214	219	anti-parallel
Strand 5	B	224	231	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	319	321	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	57	first strand
Strand 2	D	104	110	anti-parallel
Strand 3	D	72	77	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	89	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ES4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ES4