Analysis of interatomic Contacts of Structural Units in PDB entry:
8ES6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ES6 entry

There are 4 chains in PDB entry 8ES6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 178
A
 LEU 180GLY 488
B
 GLU 3GLY 178
B
 LEU 180GLY 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8ES6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
22 42Right-handed alpha
Helix 3
AA3
A
48 65Right-handed alpha
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
106 115Right-handed alpha
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
156 165Right-handed alpha
Helix 8
AA8
A
180 188Right-handed alpha
Helix 9
AA9
A
227 239Right-handed alpha
Helix 10
AB1
A
274 290Right-handed alpha
Helix 11
AB2
A
305 317Right-handed alpha
Helix 12
AB3
A
369 388Right-handed alpha
Helix 13
AB4
A
407 410Right-handed 310
Helix 14
AB5
A
423 428Right-handed alpha
Helix 15
AB6
A
429 436Right-handed alpha
Helix 16
AB7
A
463 476Right-handed alpha
Helix 17
AB8
B
8 18Right-handed alpha
Helix 18
AB9
B
22 42Right-handed alpha
Helix 19
AC1
B
48 65Right-handed alpha
Helix 20
AC2
B
106 115Right-handed alpha
Helix 21
AC3
B
126 130Right-handed 310
Helix 22
AC4
B
156 165Right-handed alpha
Helix 23
AC5
B
180 188Right-handed alpha
Helix 24
AC6
B
227 239Right-handed alpha
Helix 25
AC7
B
274 290Right-handed alpha
Helix 26
AC8
B
305 317Right-handed alpha
Helix 27
AC9
B
370 388Right-handed alpha
Helix 28
AD1
B
423 428Right-handed alpha
Helix 29
AD2
B
429 436Right-handed alpha
Helix 30
AD3
B
463 475Right-handed alpha
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There are 8 sheets in PDB entry 8ES6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
76 80parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
140 141anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
190 193anti-parallel
Strand 4
A
439 443anti-parallel
Strand 5
A
454 458anti-parallel
Strand 6
A
390 393anti-parallel
Strand 7
A
260 264parallel
Strand 8
A
294 297parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
418 421anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
76 80parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
140 141anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
220 225anti-parallel
Strand 3
B
190 193anti-parallel
Strand 4
B
439 443anti-parallel
Strand 5
B
454 458anti-parallel
Strand 6
B
390 393anti-parallel
Strand 7
B
261 264parallel
Strand 8
B
295 297parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 415first strand
Strand 2
B
418 421anti-parallel
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