Analysis of interatomic Contacts of Structural Units in PDB entry:
8ES8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ES8 entry

There are 11 chains in PDB entry 8ES8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Z	GLN 22	SER 56
Y	GLY 25	PHE 55
D	PHE 22	GLY 127
F	GLN 33	LYS 156
G	GLN 23	GLY 138
E	GLN 33	ARG 155
A	GLN 2	SER 258
B	LYS 3	LYS 289
N	GLY 1	GLU 275
M	MET 0	MET 99
P	GLY 1	VAL 10

There are 25 helices in PDB entry 8ES8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Z	29	56	Right-handed alpha
Helix 2	AA2	Y	28	55	Right-handed alpha
Helix 3	AA3	D	64	66	Right-handed 310
Helix 4	AA4	D	100	127	Right-handed alpha
Helix 5	AA5	F	88	93	Right-handed alpha
Helix 6	AA6	F	104	108	Right-handed 310
Helix 7	AA7	F	126	156	Right-handed alpha
Helix 8	AA8	G	78	80	Right-handed 310
Helix 9	AA9	G	111	136	Right-handed alpha
Helix 10	AB1	E	88	93	Right-handed alpha
Helix 11	AB2	E	126	154	Right-handed alpha
Helix 12	AB3	A	83	87	Right-handed 310
Helix 13	AB4	A	213	220	Right-handed alpha
Helix 14	AB5	A	224	257	Right-handed alpha
Helix 15	AB6	B	82	86	Right-handed 310
Helix 16	AB7	B	116	120	Right-handed 310
Helix 17	AB8	B	131	139	Right-handed alpha
Helix 18	AB9	B	198	202	Right-handed alpha
Helix 19	AC1	B	248	289	Right-handed alpha
Helix 20	AC2	N	49	55	Right-handed 310
Helix 21	AC3	N	56	86	Right-handed alpha
Helix 22	AC4	N	137	151	Right-handed alpha
Helix 23	AC5	N	151	162	Right-handed alpha
Helix 24	AC6	N	162	175	Right-handed alpha
Helix 25	AC7	N	175	180	Right-handed alpha

There are 28 sheets in PDB entry 8ES8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	57	62	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	84	91	anti-parallel
Strand 4	E	110	116	parallel
Strand 5	E	94	100	anti-parallel
Strand 6	E	57	61	anti-parallel
Strand 7	E	65	66	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	E	122	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	44	48	anti-parallel
Strand 3	F	81	84	anti-parallel
Strand 4	F	75	77	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	57	61	anti-parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	111	116	anti-parallel
Strand 5	G	97	102	parallel
Strand 6	G	83	88	anti-parallel
Strand 7	G	53	57	anti-parallel
Strand 8	G	60	65	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	123	first strand
Strand 2	G	108	109	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	34	first strand
Strand 2	G	41	46	anti-parallel
Strand 3	G	71	76	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	44	48	anti-parallel
Strand 3	E	81	85	anti-parallel
Strand 4	E	75	77	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	24	26	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	111	116	parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	46	52	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	111	116	parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	106	107	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	74	79	anti-parallel
Strand 3	A	64	69	anti-parallel
Strand 4	A	60	61	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	138	143	anti-parallel
Strand 3	A	174	183	anti-parallel
Strand 4	A	159	161	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	138	143	anti-parallel
Strand 3	A	174	183	anti-parallel
Strand 4	A	165	169	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	23	25	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	109	114	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	31	38	anti-parallel
Strand 5	B	42	49	anti-parallel
Strand 6	B	56	57	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	109	114	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	104	105	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	75	78	anti-parallel
Strand 3	B	64	67	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	188	197	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	188	197	anti-parallel
Strand 4	B	177	178	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	155	161	anti-parallel
Strand 3	B	207	214	anti-parallel
Strand 4	B	233	240	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	46	47	first strand
Strand 2	N	31	37	anti-parallel
Strand 3	N	21	28	anti-parallel
Strand 4	N	3	12	anti-parallel
Strand 5	N	94	103	anti-parallel
Strand 6	N	109	118	anti-parallel
Strand 7	N	121	126	anti-parallel
Strand 8	N	133	135	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	189	193	first strand
Strand 2	N	198	208	anti-parallel
Strand 3	N	241	250	anti-parallel
Strand 4	N	228	230	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	189	193	first strand
Strand 2	N	198	208	anti-parallel
Strand 3	N	241	250	anti-parallel
Strand 4	N	234	235	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	222	223	first strand
Strand 2	N	214	219	anti-parallel
Strand 3	N	257	262	anti-parallel
Strand 4	N	272	273	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	11	first strand
Strand 2	M	21	30	anti-parallel
Strand 3	M	62	70	anti-parallel
Strand 4	M	50	51	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	11	first strand
Strand 2	M	21	30	anti-parallel
Strand 3	M	62	70	anti-parallel
Strand 4	M	55	56	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	44	45	first strand
Strand 2	M	36	41	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ES8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ES8