Analysis of interatomic Contacts of Structural Units in PDB entry:
8ES9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ES9 entry

There are 9 chains in PDB entry 8ES9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	TRP 252
B	VAL 3	ARG 289
Z	GLN 22	ARG 57
Y	GLY 25	PHE 55
D	PHE 22	GLY 127
F	GLN 33	LYS 156
G	GLN 23	GLY 138
E	GLN 33	ARG 155
N	GLY 1	LYS 186

There are 23 helices in PDB entry 8ES9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	216	Right-handed alpha
Helix 2	AA2	A	220	252	Right-handed alpha
Helix 3	AA3	B	85	89	Right-handed 310
Helix 4	AA4	B	132	140	Right-handed alpha
Helix 5	AA5	B	199	203	Right-handed alpha
Helix 6	AA6	B	249	289	Right-handed alpha
Helix 7	AA7	Z	29	57	Right-handed alpha
Helix 8	AA8	Y	28	55	Right-handed alpha
Helix 9	AA9	D	100	127	Right-handed alpha
Helix 10	AB1	F	88	93	Right-handed alpha
Helix 11	AB2	F	104	108	Right-handed 310
Helix 12	AB3	F	126	156	Right-handed alpha
Helix 13	AB4	G	78	80	Right-handed 310
Helix 14	AB5	G	111	136	Right-handed alpha
Helix 15	AB6	E	88	93	Right-handed alpha
Helix 16	AB7	E	126	155	Right-handed alpha
Helix 17	AB8	N	49	53	Right-handed 310
Helix 18	AB9	N	56	86	Right-handed alpha
Helix 19	AC1	N	138	149	Right-handed alpha
Helix 20	AC2	N	151	162	Right-handed alpha
Helix 21	AC3	N	162	175	Right-handed alpha
Helix 22	AC4	N	175	180	Right-handed alpha
Helix 23	AC5	N	253	255	Right-handed 310

There are 26 sheets in PDB entry 8ES9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	62	66	anti-parallel
Strand 5	A	56	58	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	108	112	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	49	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	85	91	anti-parallel
Strand 4	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	155	157	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	170	179	anti-parallel
Strand 4	A	161	165	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	111	115	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	22	first strand
Strand 2	B	78	81	anti-parallel
Strand 3	B	67	69	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	32	37	anti-parallel
Strand 4	B	94	97	anti-parallel
Strand 5	B	105	106	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	178	179	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	156	162	anti-parallel
Strand 3	B	208	215	anti-parallel
Strand 4	B	234	241	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	28	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	57	62	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	84	91	anti-parallel
Strand 4	E	110	116	parallel
Strand 5	E	94	100	anti-parallel
Strand 6	E	57	61	anti-parallel
Strand 7	E	65	66	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	E	122	124	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	44	48	anti-parallel
Strand 3	F	81	85	anti-parallel
Strand 4	F	75	77	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	57	61	anti-parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	111	116	anti-parallel
Strand 5	G	97	102	parallel
Strand 6	G	83	88	anti-parallel
Strand 7	G	53	57	anti-parallel
Strand 8	G	60	65	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	123	first strand
Strand 2	G	108	109	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	34	first strand
Strand 2	G	41	45	anti-parallel
Strand 3	G	72	76	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	44	48	anti-parallel
Strand 3	E	81	85	anti-parallel
Strand 4	E	75	77	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	46	47	first strand
Strand 2	N	31	37	anti-parallel
Strand 3	N	21	28	anti-parallel
Strand 4	N	3	12	anti-parallel
Strand 5	N	94	103	anti-parallel
Strand 6	N	109	118	anti-parallel
Strand 7	N	121	126	anti-parallel
Strand 8	N	133	135	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	189	193	first strand
Strand 2	N	198	208	anti-parallel
Strand 3	N	241	250	anti-parallel
Strand 4	N	228	230	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	189	193	first strand
Strand 2	N	198	208	anti-parallel
Strand 3	N	241	250	anti-parallel
Strand 4	N	234	235	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	222	223	first strand
Strand 2	N	213	219	anti-parallel
Strand 3	N	257	263	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	11	first strand
Strand 2	M	21	30	anti-parallel
Strand 3	M	62	70	anti-parallel
Strand 4	M	50	51	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	11	first strand
Strand 2	M	21	30	anti-parallel
Strand 3	M	62	70	anti-parallel
Strand 4	M	55	56	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	44	45	first strand
Strand 2	M	35	41	anti-parallel
Strand 3	M	78	84	anti-parallel
Strand 4	M	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ES9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ES9