Analysis of interatomic Contacts of Structural Units in PDB entry:
8ESD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ESD entry

There are 4 chains in PDB entry 8ESD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 SER 12THR 202
N
 THR 5LYS 198
F
 LEU 149ASP 223
S
 ILE 131CYS 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8ESD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
T
14 25Right-handed alpha
Helix 2
AA2
T
29 42Right-handed alpha
Helix 3
AA3
T
54 62Right-handed alpha
Helix 4
AA4
T
64 86Right-handed alpha
Helix 5
AA5
T
88 99Right-handed alpha
Helix 6
AA6
T
102 127Right-handed alpha
Helix 7
AA7
T
181 201Right-handed alpha
Helix 8
AA8
N
6 13Right-handed alpha
Helix 9
AA9
N
14 18Right-handed 310
Helix 10
AB1
N
20 34Right-handed alpha
Helix 11
AB2
N
38 41Right-handed 310
Helix 12
AB3
N
42 51Right-handed alpha
Helix 13
AB4
N
53 75Right-handed alpha
Helix 14
AB5
N
78 84Right-handed alpha
Helix 15
AB6
N
91 115Right-handed alpha
Helix 16
AB7
N
156 161Right-handed alpha
Helix 17
AB8
N
175 192Right-handed alpha
Helix 18
AB9
F
194 223Right-handed alpha
Helix 19
AC1
S
178 198Right-handed alpha
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There are 5 sheets in PDB entry 8ESD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
132 134first strand
Strand 2
T
157 166anti-parallel
Strand 3
T
138 142anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
132 134first strand
Strand 2
T
157 166anti-parallel
Strand 3
T
172 180anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
122 127first strand
Strand 2
N
144 154anti-parallel
Strand 3
N
130 133anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
122 127first strand
Strand 2
N
144 154anti-parallel
Strand 3
N
166 174anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
187 193first strand
Strand 2
F
173 182anti-parallel
Strand 3
F
152 165anti-parallel
Strand 4
S
133 147anti-parallel
Strand 5
S
156 166anti-parallel
Strand 6
S
169 177anti-parallel
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