Analysis of interatomic Contacts of Structural Units in PDB entry:
8ESI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ESI entry

There are 8 chains in PDB entry 8ESI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 2	ARG 317
B	CYS 2	ARG 317
C	CYS 2	ARG 317
D	CYS 2	ALA 316
E	CYS 2	VAL 315
F	CYS 2	ALA 316
G	CYS 2	ALA 316
H	CYS 2	ALA 316

There are 59 helices in PDB entry 8ESI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	113	Right-handed alpha
Helix 2	AA2	A	115	123	Right-handed alpha
Helix 3	AA3	A	176	184	Right-handed alpha
Helix 4	AA4	A	185	188	Right-handed 310
Helix 5	AA5	A	222	237	Right-handed alpha
Helix 6	AA6	A	242	256	Right-handed alpha
Helix 7	AA7	A	303	305	Right-handed 310
Helix 8	AA8	B	104	113	Right-handed alpha
Helix 9	AA9	B	115	123	Right-handed alpha
Helix 10	AB1	B	176	184	Right-handed alpha
Helix 11	AB2	B	185	188	Right-handed 310
Helix 12	AB3	B	211	215	Right-handed 310
Helix 13	AB4	B	222	237	Right-handed alpha
Helix 14	AB5	B	242	256	Right-handed alpha
Helix 15	AB6	B	303	305	Right-handed 310
Helix 16	AB7	C	104	113	Right-handed alpha
Helix 17	AB8	C	115	123	Right-handed alpha
Helix 18	AB9	C	176	185	Right-handed alpha
Helix 19	AC1	C	211	215	Right-handed 310
Helix 20	AC2	C	222	237	Right-handed alpha
Helix 21	AC3	C	242	256	Right-handed alpha
Helix 22	AC4	C	303	305	Right-handed 310
Helix 23	AC5	D	104	113	Right-handed alpha
Helix 24	AC6	D	115	124	Right-handed alpha
Helix 25	AC7	D	176	184	Right-handed alpha
Helix 26	AC8	D	185	188	Right-handed 310
Helix 27	AC9	D	211	215	Right-handed 310
Helix 28	AD1	D	222	237	Right-handed alpha
Helix 29	AD2	D	242	256	Right-handed alpha
Helix 30	AD3	E	104	113	Right-handed alpha
Helix 31	AD4	E	115	124	Right-handed alpha
Helix 32	AD5	E	176	185	Right-handed alpha
Helix 33	AD6	E	186	188	Right-handed 310
Helix 34	AD7	E	211	215	Right-handed 310
Helix 35	AD8	E	222	237	Right-handed alpha
Helix 36	AD9	E	242	256	Right-handed alpha
Helix 37	AE1	E	303	305	Right-handed 310
Helix 38	AE2	F	104	113	Right-handed alpha
Helix 39	AE3	F	115	123	Right-handed alpha
Helix 40	AE4	F	176	184	Right-handed alpha
Helix 41	AE5	F	185	188	Right-handed 310
Helix 42	AE6	F	222	237	Right-handed alpha
Helix 43	AE7	F	242	256	Right-handed alpha
Helix 44	AE8	G	104	113	Right-handed alpha
Helix 45	AE9	G	115	123	Right-handed alpha
Helix 46	AF1	G	176	185	Right-handed alpha
Helix 47	AF2	G	186	188	Right-handed 310
Helix 48	AF3	G	211	215	Right-handed 310
Helix 49	AF4	G	222	237	Right-handed alpha
Helix 50	AF5	G	242	256	Right-handed alpha
Helix 51	AF6	G	303	305	Right-handed 310
Helix 52	AF7	H	104	113	Right-handed alpha
Helix 53	AF8	H	115	123	Right-handed alpha
Helix 54	AF9	H	176	185	Right-handed alpha
Helix 55	AG1	H	186	188	Right-handed 310
Helix 56	AG2	H	211	215	Right-handed 310
Helix 57	AG3	H	222	237	Right-handed alpha
Helix 58	AG4	H	242	256	Right-handed alpha
Helix 59	AG5	H	303	305	Right-handed 310

There are 32 sheets in PDB entry 8ESI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	3	7	anti-parallel
Strand 3	A	15	22	anti-parallel
Strand 4	A	273	281	anti-parallel
Strand 5	A	286	291	anti-parallel
Strand 6	A	298	301	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	165	first strand
Strand 2	A	151	157	anti-parallel
Strand 3	A	141	146	anti-parallel
Strand 4	A	77	82	anti-parallel
Strand 5	A	64	72	anti-parallel
Strand 6	A	54	61	anti-parallel
Strand 7	A	29	33	anti-parallel
Strand 8	A	313	315	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	126	129	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	203	205	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	14	22	anti-parallel
Strand 4	B	273	281	anti-parallel
Strand 5	B	286	291	anti-parallel
Strand 6	B	294	301	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	165	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	141	146	anti-parallel
Strand 4	B	77	82	anti-parallel
Strand 5	B	64	72	anti-parallel
Strand 6	B	54	61	anti-parallel
Strand 7	B	29	33	anti-parallel
Strand 8	B	313	315	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	126	129	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	203	205	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	14	22	anti-parallel
Strand 4	C	273	281	anti-parallel
Strand 5	C	286	291	anti-parallel
Strand 6	C	298	301	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	165	first strand
Strand 2	C	151	157	anti-parallel
Strand 3	C	141	146	anti-parallel
Strand 4	C	77	82	anti-parallel
Strand 5	C	64	72	anti-parallel
Strand 6	C	54	61	anti-parallel
Strand 7	C	29	33	anti-parallel
Strand 8	C	313	315	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	126	129	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	203	205	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	3	8	anti-parallel
Strand 3	D	14	22	anti-parallel
Strand 4	D	273	281	anti-parallel
Strand 5	D	286	291	anti-parallel
Strand 6	D	298	301	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	165	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	141	146	anti-parallel
Strand 4	D	77	82	anti-parallel
Strand 5	D	64	72	anti-parallel
Strand 6	D	54	61	anti-parallel
Strand 7	D	29	33	anti-parallel
Strand 8	D	313	315	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	126	129	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	203	205	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	171	first strand
Strand 2	E	3	7	anti-parallel
Strand 3	E	15	22	anti-parallel
Strand 4	E	273	281	anti-parallel
Strand 5	E	286	291	anti-parallel
Strand 6	E	298	301	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	165	first strand
Strand 2	E	151	157	anti-parallel
Strand 3	E	141	146	anti-parallel
Strand 4	E	77	82	anti-parallel
Strand 5	E	64	72	anti-parallel
Strand 6	E	54	61	anti-parallel
Strand 7	E	29	33	anti-parallel
Strand 8	E	313	315	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	101	first strand
Strand 2	E	126	129	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	203	205	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	4	8	anti-parallel
Strand 3	F	14	22	anti-parallel
Strand 4	F	273	281	anti-parallel
Strand 5	F	286	291	anti-parallel
Strand 6	F	298	301	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	165	first strand
Strand 2	F	151	156	anti-parallel
Strand 3	F	141	146	anti-parallel
Strand 4	F	77	82	anti-parallel
Strand 5	F	64	72	anti-parallel
Strand 6	F	54	61	anti-parallel
Strand 7	F	29	33	anti-parallel
Strand 8	F	313	315	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	101	first strand
Strand 2	F	126	129	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	203	205	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	171	first strand
Strand 2	G	3	8	anti-parallel
Strand 3	G	14	22	anti-parallel
Strand 4	G	273	281	anti-parallel
Strand 5	G	286	291	anti-parallel
Strand 6	G	294	301	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	165	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel
Strand 4	G	77	82	anti-parallel
Strand 5	G	64	72	anti-parallel
Strand 6	G	54	61	anti-parallel
Strand 7	G	29	33	anti-parallel
Strand 8	G	313	315	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	101	first strand
Strand 2	G	126	129	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	198	200	first strand
Strand 2	G	203	205	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	170	171	first strand
Strand 2	H	3	7	anti-parallel
Strand 3	H	15	22	anti-parallel
Strand 4	H	273	281	anti-parallel
Strand 5	H	286	291	anti-parallel
Strand 6	H	294	301	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	165	first strand
Strand 2	H	151	157	anti-parallel
Strand 3	H	141	146	anti-parallel
Strand 4	H	77	82	anti-parallel
Strand 5	H	64	71	anti-parallel
Strand 6	H	54	61	anti-parallel
Strand 7	H	29	33	anti-parallel
Strand 8	H	313	315	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	101	first strand
Strand 2	H	126	129	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	200	first strand
Strand 2	H	203	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ESI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ESI