Analysis of interatomic Contacts of Structural Units in PDB entry:
8ETE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ETE entry

There are 2 chains in PDB entry 8ETE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 2	ALA 316
B	CYS 2	ALA 316

There are 16 helices in PDB entry 8ETE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	113	Right-handed alpha
Helix 2	AA2	A	115	123	Right-handed alpha
Helix 3	AA3	A	176	185	Right-handed alpha
Helix 4	AA4	A	186	188	Right-handed 310
Helix 5	AA5	A	211	215	Right-handed 310
Helix 6	AA6	A	222	237	Right-handed alpha
Helix 7	AA7	A	242	256	Right-handed alpha
Helix 8	AA8	A	303	305	Right-handed 310
Helix 9	AA9	B	104	113	Right-handed alpha
Helix 10	AB1	B	115	123	Right-handed alpha
Helix 11	AB2	B	176	184	Right-handed alpha
Helix 12	AB3	B	185	188	Right-handed 310
Helix 13	AB4	B	211	215	Right-handed 310
Helix 14	AB5	B	222	237	Right-handed alpha
Helix 15	AB6	B	242	256	Right-handed alpha
Helix 16	AB7	B	303	305	Right-handed 310

There are 8 sheets in PDB entry 8ETE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	3	8	anti-parallel
Strand 3	A	14	22	anti-parallel
Strand 4	A	273	281	anti-parallel
Strand 5	A	286	291	anti-parallel
Strand 6	A	294	301	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	165	first strand
Strand 2	A	151	157	anti-parallel
Strand 3	A	141	146	anti-parallel
Strand 4	A	77	82	anti-parallel
Strand 5	A	64	72	anti-parallel
Strand 6	A	54	61	anti-parallel
Strand 7	A	29	33	anti-parallel
Strand 8	A	313	315	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	126	129	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	203	205	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	3	7	anti-parallel
Strand 3	B	15	22	anti-parallel
Strand 4	B	273	281	anti-parallel
Strand 5	B	286	291	anti-parallel
Strand 6	B	294	301	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	166	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	141	146	anti-parallel
Strand 4	B	77	82	anti-parallel
Strand 5	B	64	72	anti-parallel
Strand 6	B	54	61	anti-parallel
Strand 7	B	29	33	anti-parallel
Strand 8	B	313	315	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	126	129	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	203	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ETE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ETE