Analysis of interatomic Contacts of Structural Units in PDB entry:
8ETR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ETR entry

There is 1 chain in PDB entry 8ETR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 134VAL 676
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8ETR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 148Right-handed alpha
Helix 2
AA2
A
204 208Right-handed 310
Helix 3
AA3
A
231 245Right-handed alpha
Helix 4
AA4
A
272 278Right-handed alpha
Helix 5
AA5
A
286 291Right-handed alpha
Helix 6
AA6
A
292 295Right-handed 310
Helix 7
AA7
A
304 307Right-handed 310
Helix 8
AA8
A
328 337Right-handed alpha
Helix 9
AA9
A
351 353Right-handed 310
Helix 10
AB1
A
354 359Right-handed alpha
Helix 11
AB2
A
374 386Right-handed alpha
Helix 12
AB3
A
388 401Right-handed alpha
Helix 13
AB4
A
402 409Right-handed alpha
Helix 14
AB5
A
411 428Right-handed alpha
Helix 15
AB6
A
438 451Right-handed alpha
Helix 16
AB7
A
464 480Right-handed alpha
Helix 17
AB8
A
486 493Right-handed alpha
Helix 18
AB9
A
522 534Right-handed alpha
Helix 19
AC1
A
557 564Right-handed alpha
Helix 20
AC2
A
573 585Right-handed alpha
Helix 21
AC3
A
591 595Right-handed 310
Helix 22
AC4
A
598 617Right-handed alpha
Helix 23
AC5
A
626 637Right-handed alpha
Helix 24
AC6
A
639 648Right-handed alpha
Helix 25
AC7
A
659 672Right-handed alpha
Helix 26
AC8
A
673 675Right-handed 310
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There are 3 sheets in PDB entry 8ETR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
297 302parallel
Strand 3
A
345 350parallel
Strand 4
A
221 225parallel
Strand 5
A
366 369parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
325 327anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 485first strand
Strand 2
A
517 520anti-parallel
Strand 3
A
508 511anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il