Analysis of interatomic Contacts of Structural Units in PDB entry:
8EUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EUQ entry

There are 7 chains in PDB entry 8EUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	LEU 187
D	ASP 1	GLY 212
F	GLU 3	LEU 187
H	ASP 1	GLU 213
B	ALA 4	ALA 219
C	GLN 1	SER 215
G	ALA 4	TYR 61

There are 27 helices in PDB entry 8EUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	51	Right-handed 310
Helix 2	AA2	A	56	76	Right-handed alpha
Helix 3	AA3	D	79	83	Right-handed 310
Helix 4	AA4	D	121	127	Right-handed alpha
Helix 5	AA5	D	183	187	Right-handed alpha
Helix 6	AA6	F	45	51	Right-handed 310
Helix 7	AA7	F	55	77	Right-handed alpha
Helix 8	AA8	H	79	83	Right-handed 310
Helix 9	AA9	H	121	127	Right-handed alpha
Helix 10	AB1	H	183	187	Right-handed alpha
Helix 11	AB2	B	80	82	Right-handed 310
Helix 12	AB3	B	83	93	Right-handed alpha
Helix 13	AB4	B	93	107	Right-handed alpha
Helix 14	AB5	B	107	116	Right-handed alpha
Helix 15	AB6	C	61	64	Right-handed 310
Helix 16	AB7	C	83	87	Right-handed 310
Helix 17	AB8	C	130	135	Right-handed alpha
Helix 18	AB9	C	185	191	Right-handed 310
Helix 19	AC1	C	201	204	Right-handed 310
Helix 20	AC2	G	80	82	Right-handed 310
Helix 21	AC3	G	83	93	Right-handed alpha
Helix 22	AC4	G	93	102	Right-handed alpha
Helix 23	AC5	G	102	107	Right-handed alpha
Helix 24	AC6	G	107	115	Right-handed alpha
Helix 25	AC7	I	83	87	Right-handed 310
Helix 26	AC8	I	187	190	Right-handed 310
Helix 27	AC9	I	201	204	Right-handed 310

There are 35 sheets in PDB entry 8EUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	15	anti-parallel
Strand 5	B	36	47	anti-parallel
Strand 6	B	52	61	anti-parallel
Strand 7	B	64	70	anti-parallel
Strand 8	B	76	78	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	160	166	anti-parallel
Strand 4	A	174	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	64	67	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	105	106	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	85	90	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	160	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	150	first strand
Strand 2	D	192	197	anti-parallel
Strand 3	D	205	209	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	43	first strand
Strand 2	F	29	35	anti-parallel
Strand 3	F	19	26	anti-parallel
Strand 4	F	5	15	anti-parallel
Strand 5	G	36	47	anti-parallel
Strand 6	G	52	61	anti-parallel
Strand 7	G	64	70	anti-parallel
Strand 8	G	76	78	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	93	first strand
Strand 2	F	103	112	anti-parallel
Strand 3	F	145	153	anti-parallel
Strand 4	F	133	134	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	93	first strand
Strand 2	F	103	112	anti-parallel
Strand 3	F	145	153	anti-parallel
Strand 4	F	138	139	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	128	first strand
Strand 2	F	118	123	anti-parallel
Strand 3	F	160	166	anti-parallel
Strand 4	F	174	179	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	64	67	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	105	106	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	44	49	anti-parallel
Strand 3	H	33	38	anti-parallel
Strand 4	H	85	90	anti-parallel
Strand 5	H	97	98	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	160	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	150	first strand
Strand 2	H	191	197	anti-parallel
Strand 3	H	205	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	143	151	anti-parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	171	173	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	143	151	anti-parallel
Strand 3	B	184	190	anti-parallel
Strand 4	B	177	178	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	199	205	anti-parallel
Strand 3	B	213	218	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	96	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	96	anti-parallel
Strand 4	C	100	103	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	137	145	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	124	first strand
Strand 2	C	137	145	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	195	200	anti-parallel
Strand 3	C	205	210	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	133	first strand
Strand 2	G	143	151	anti-parallel
Strand 3	G	184	190	anti-parallel
Strand 4	G	171	173	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	133	first strand
Strand 2	G	143	151	anti-parallel
Strand 3	G	184	190	anti-parallel
Strand 4	G	177	178	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	166	first strand
Strand 2	G	157	162	anti-parallel
Strand 3	G	199	205	anti-parallel
Strand 4	G	213	218	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	96	anti-parallel
Strand 4	I	32	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	135	145	anti-parallel
Strand 3	I	176	185	anti-parallel
Strand 4	I	163	165	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	135	145	anti-parallel
Strand 3	I	176	185	anti-parallel
Strand 4	I	169	170	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	154	first strand
Strand 2	I	195	200	anti-parallel
Strand 3	I	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EUQ