Analysis of interatomic Contacts of Structural Units in PDB entry:
8EUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EUS entry

There are 2 chains in PDB entry 8EUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 401ARG 607
A
 GLY 400GLU 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8EUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
432 435Right-handed 310
Helix 2
AA2
C
436 452Right-handed alpha
Helix 3
AA3
C
464 468Right-handed alpha
Helix 4
AA4
C
483 489Right-handed 310
Helix 5
AA5
C
491 496Right-handed alpha
Helix 6
AA6
C
508 517Right-handed alpha
Helix 7
AA7
C
542 546Right-handed alpha
Helix 8
AA8
C
554 558Right-handed 310
Helix 9
AA9
C
573 593Right-handed alpha
Helix 10
AB1
A
432 435Right-handed 310
Helix 11
AB2
A
436 452Right-handed alpha
Helix 12
AB3
A
465 467Right-handed 310
Helix 13
AB4
A
483 489Right-handed 310
Helix 14
AB5
A
491 497Right-handed alpha
Helix 15
AB6
A
508 517Right-handed alpha
Helix 16
AB7
A
542 545Right-handed 310
Helix 17
AB8
A
554 558Right-handed 310
Helix 18
AB9
A
573 593Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8EUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
547 548first strand
Strand 2
C
560 567anti-parallel
Strand 3
C
404 411anti-parallel
Strand 4
C
600 604anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
418 420first strand
Strand 2
C
429 431anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
454 457first strand
Strand 2
C
460 463anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
499 500first strand
Strand 2
C
505 507anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
560 568anti-parallel
Strand 3
A
403 411anti-parallel
Strand 4
A
600 604anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
429 431anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
460 463anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
505 507anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il