Analysis of interatomic Contacts of Structural Units in PDB entry:
8EVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EVD entry

There are 7 chains in PDB entry 8EVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	SER 128
B	VAL 4	VAL 127
C	GLU 26	ARG 319
D	GLU 26	ARG 319
E	GLU 3	SER 128
F	GLU 3	SER 129
G	GLU 26	LEU 219

There are109 helices in PDB entry 8EVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	96	Right-handed 310
Helix 2	AA2	A	106	112	Right-handed alpha
Helix 3	AA3	B	92	96	Right-handed 310
Helix 4	AA4	B	106	112	Right-handed alpha
Helix 5	AA5	C	66	71	Right-handed 310
Helix 6	AA6	C	73	78	Right-handed alpha
Helix 7	AA7	C	102	118	Right-handed alpha
Helix 8	AA8	C	129	134	Right-handed alpha
Helix 9	AA9	C	135	142	Right-handed alpha
Helix 10	AB1	C	158	164	Right-handed 310
Helix 11	AB2	C	176	183	Right-handed alpha
Helix 12	AB3	C	186	193	Right-handed alpha
Helix 13	AB4	C	195	207	Right-handed alpha
Helix 14	AB5	C	210	214	Right-handed 310
Helix 15	AB6	C	215	227	Right-handed alpha
Helix 16	AB7	C	228	241	Right-handed alpha
Helix 17	AB8	C	241	253	Right-handed alpha
Helix 18	AB9	C	274	284	Right-handed alpha
Helix 19	AC1	C	298	303	Right-handed alpha
Helix 20	AC2	C	303	317	Right-handed alpha
Helix 21	AC3	D	66	71	Right-handed 310
Helix 22	AC4	D	73	78	Right-handed alpha
Helix 23	AC5	D	102	118	Right-handed alpha
Helix 24	AC6	D	129	134	Right-handed alpha
Helix 25	AC7	D	135	142	Right-handed alpha
Helix 26	AC8	D	158	164	Right-handed 310
Helix 27	AC9	D	176	183	Right-handed alpha
Helix 28	AD1	D	186	193	Right-handed alpha
Helix 29	AD2	D	195	207	Right-handed alpha
Helix 30	AD3	D	210	214	Right-handed 310
Helix 31	AD4	D	215	227	Right-handed alpha
Helix 32	AD5	D	228	241	Right-handed alpha
Helix 33	AD6	D	241	253	Right-handed alpha
Helix 34	AD7	D	274	284	Right-handed alpha
Helix 35	AD8	D	298	303	Right-handed alpha
Helix 36	AD9	D	303	317	Right-handed alpha
Helix 37	AE1	E	67	70	Right-handed 310
Helix 38	AE2	E	92	96	Right-handed 310
Helix 39	AE3	E	106	112	Right-handed alpha
Helix 40	AE4	F	92	96	Right-handed 310
Helix 41	AE5	F	106	112	Right-handed alpha
Helix 42	AE6	G	66	71	Right-handed 310
Helix 43	AE7	G	73	78	Right-handed alpha
Helix 44	AE8	G	102	118	Right-handed alpha
Helix 45	AE9	G	129	134	Right-handed alpha
Helix 46	AF1	G	135	142	Right-handed alpha
Helix 47	AF2	G	158	164	Right-handed 310
Helix 48	AF3	G	176	183	Right-handed alpha
Helix 49	AF4	G	186	193	Right-handed alpha
Helix 50	AF5	G	195	207	Right-handed alpha
Helix 51	AF6	G	210	214	Right-handed 310
Helix 52	AF7	G	215	227	Right-handed alpha
Helix 53	AF8	G	228	241	Right-handed alpha
Helix 54	AF9	G	241	253	Right-handed alpha
Helix 55	AG1	G	274	281	Right-handed alpha
Helix 56	AG2	G	298	303	Right-handed alpha
Helix 57	AG3	G	303	317	Right-handed alpha
Helix 58	AG4	H	66	71	Right-handed 310
Helix 59	AG5	H	73	78	Right-handed alpha
Helix 60	AG6	H	102	118	Right-handed alpha
Helix 61	AG7	H	129	134	Right-handed alpha
Helix 62	AG8	H	135	142	Right-handed alpha
Helix 63	AG9	H	158	164	Right-handed 310
Helix 64	AH1	H	176	183	Right-handed alpha
Helix 65	AH2	H	186	193	Right-handed alpha
Helix 66	AH3	H	195	207	Right-handed alpha
Helix 67	AH4	H	210	214	Right-handed 310
Helix 68	AH5	H	215	227	Right-handed alpha
Helix 69	AH6	H	228	241	Right-handed alpha
Helix 70	AH7	H	241	253	Right-handed alpha
Helix 71	AH8	H	274	284	Right-handed alpha
Helix 72	AH9	H	298	303	Right-handed alpha
Helix 73	AI1	H	303	317	Right-handed alpha
Helix 74	AI2	I	92	96	Right-handed 310
Helix 75	AI3	I	106	112	Right-handed alpha
Helix 76	AI4	J	92	96	Right-handed 310
Helix 77	AI5	J	106	112	Right-handed alpha
Helix 78	AI6	K	66	71	Right-handed 310
Helix 79	AI7	K	73	78	Right-handed alpha
Helix 80	AI8	K	102	118	Right-handed alpha
Helix 81	AI9	K	129	134	Right-handed alpha
Helix 82	AJ1	K	135	142	Right-handed alpha
Helix 83	AJ2	K	158	164	Right-handed 310
Helix 84	AJ3	K	176	183	Right-handed alpha
Helix 85	AJ4	K	186	193	Right-handed alpha
Helix 86	AJ5	K	195	207	Right-handed alpha
Helix 87	AJ6	K	210	214	Right-handed 310
Helix 88	AJ7	K	215	227	Right-handed alpha
Helix 89	AJ8	K	228	241	Right-handed alpha
Helix 90	AJ9	K	241	253	Right-handed alpha
Helix 91	AK1	K	274	282	Right-handed alpha
Helix 92	AK2	K	298	303	Right-handed alpha
Helix 93	AK3	K	303	317	Right-handed alpha
Helix 94	AK4	L	66	71	Right-handed 310
Helix 95	AK5	L	73	78	Right-handed alpha
Helix 96	AK6	L	102	118	Right-handed alpha
Helix 97	AK7	L	129	134	Right-handed alpha
Helix 98	AK8	L	135	142	Right-handed alpha
Helix 99	AK9	L	158	164	Right-handed 310
Helix 100	AL1	L	176	183	Right-handed alpha
Helix 101	AL2	L	186	193	Right-handed alpha
Helix 102	AL3	L	195	207	Right-handed alpha
Helix 103	AL4	L	210	214	Right-handed 310
Helix 104	AL5	L	215	227	Right-handed alpha
Helix 105	AL6	L	228	241	Right-handed alpha
Helix 106	AL7	L	241	253	Right-handed alpha
Helix 107	AL8	L	274	282	Right-handed alpha
Helix 108	AL9	L	298	303	Right-handed alpha
Helix 109	AM1	L	303	317	Right-handed alpha

There are 24 sheets in PDB entry 8EVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	73	78	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	123	128	parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	35	41	anti-parallel
Strand 5	A	48	53	anti-parallel
Strand 6	A	63	65	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	73	78	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	123	126	parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	53	anti-parallel
Strand 6	B	63	65	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	41	first strand
Strand 2	C	44	52	anti-parallel
Strand 3	C	82	86	anti-parallel
Strand 4	C	56	60	parallel
Strand 5	C	123	128	parallel
Strand 6	C	146	152	parallel
Strand 7	C	261	266	parallel
Strand 8	C	287	292	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	171	172	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	41	first strand
Strand 2	D	44	52	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	56	60	parallel
Strand 5	D	123	128	parallel
Strand 6	D	146	152	parallel
Strand 7	D	261	266	parallel
Strand 8	D	287	292	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	171	172	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	20	28	anti-parallel
Strand 3	E	83	88	anti-parallel
Strand 4	E	73	78	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	123	127	parallel
Strand 3	E	97	104	anti-parallel
Strand 4	E	35	41	anti-parallel
Strand 5	E	47	53	anti-parallel
Strand 6	E	63	65	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	20	28	anti-parallel
Strand 3	F	83	88	anti-parallel
Strand 4	F	73	78	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	123	128	parallel
Strand 3	F	97	104	anti-parallel
Strand 4	F	35	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	63	65	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	41	first strand
Strand 2	G	44	52	anti-parallel
Strand 3	G	82	86	anti-parallel
Strand 4	G	56	60	parallel
Strand 5	G	123	128	parallel
Strand 6	G	146	152	parallel
Strand 7	G	261	266	parallel
Strand 8	G	287	292	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	168	first strand
Strand 2	G	171	172	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	41	first strand
Strand 2	H	44	52	anti-parallel
Strand 3	H	82	86	anti-parallel
Strand 4	H	56	60	parallel
Strand 5	H	123	128	parallel
Strand 6	H	146	152	parallel
Strand 7	H	261	266	parallel
Strand 8	H	287	292	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	168	first strand
Strand 2	H	171	172	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	9	first strand
Strand 2	I	19	28	anti-parallel
Strand 3	I	83	89	anti-parallel
Strand 4	I	73	78	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	123	126	parallel
Strand 3	I	97	104	anti-parallel
Strand 4	I	35	41	anti-parallel
Strand 5	I	48	53	anti-parallel
Strand 6	I	63	65	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	9	first strand
Strand 2	J	20	28	anti-parallel
Strand 3	J	83	88	anti-parallel
Strand 4	J	73	78	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	15	first strand
Strand 2	J	123	128	parallel
Strand 3	J	97	104	anti-parallel
Strand 4	J	35	41	anti-parallel
Strand 5	J	48	53	anti-parallel
Strand 6	J	63	65	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	41	first strand
Strand 2	K	44	52	anti-parallel
Strand 3	K	82	86	anti-parallel
Strand 4	K	56	60	parallel
Strand 5	K	123	128	parallel
Strand 6	K	146	152	parallel
Strand 7	K	261	266	parallel
Strand 8	K	287	292	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	167	168	first strand
Strand 2	K	171	172	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	41	first strand
Strand 2	L	44	52	anti-parallel
Strand 3	L	82	86	anti-parallel
Strand 4	L	56	60	parallel
Strand 5	L	123	128	parallel
Strand 6	L	146	152	parallel
Strand 7	L	261	266	parallel
Strand 8	L	287	292	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	167	168	first strand
Strand 2	L	171	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EVD