Analysis of interatomic Contacts of Structural Units in PDB entry:
8EW3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EW3 entry

There are 6 chains in PDB entry 8EW3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 446
B
 LEU 3LYS 414
C
 SER 7LEU 256
D
 LYS 8LYS 209
E
 MET 1LEU 198
F
 MET 1THR 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 8EW3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 85Right-handed 310
Helix 2
AA2
A
114 125Right-handed alpha
Helix 3
AA3
A
126 131Right-handed 310
Helix 4
AA4
A
162 170Right-handed alpha
Helix 5
AA5
A
170 185Right-handed alpha
Helix 6
AA6
A
219 228Right-handed alpha
Helix 7
AA7
A
241 254Right-handed alpha
Helix 8
AA8
A
282 287Right-handed alpha
Helix 9
AA9
A
310 314Right-handed 310
Helix 10
AB1
A
335 339Right-handed 310
Helix 11
AB2
A
351 356Right-handed 310
Helix 12
AB3
A
378 384Right-handed alpha
Helix 13
AB4
A
389 400Right-handed alpha
Helix 14
AB5
A
401 408Right-handed alpha
Helix 15
AB6
A
409 413Right-handed 310
Helix 16
AB7
A
415 417Right-handed 310
Helix 17
AB8
A
418 424Right-handed alpha
Helix 18
AB9
A
430 446Right-handed alpha
Helix 19
AC1
B
4 10Right-handed alpha
Helix 20
AC2
B
10 15Right-handed alpha
Helix 21
AC3
B
20 22Right-handed 310
Helix 22
AC4
B
23 35Right-handed alpha
Helix 23
AC5
B
52 64Right-handed alpha
Helix 24
AC6
B
64 87Right-handed alpha
Helix 25
AC7
B
89 99Right-handed alpha
Helix 26
AC8
B
99 108Right-handed alpha
Helix 27
AC9
B
117 152Right-handed alpha
Helix 28
AD1
B
158 169Right-handed alpha
Helix 29
AD2
B
175 189Right-handed alpha
Helix 30
AD3
B
191 195Right-handed 310
Helix 31
AD4
B
203 216Right-handed alpha
Helix 32
AD5
B
217 220Right-handed 310
Helix 33
AD6
B
236 245Right-handed alpha
Helix 34
AD7
B
246 249Right-handed 310
Helix 35
AD8
B
259 266Right-handed alpha
Helix 36
AD9
B
276 290Right-handed alpha
Helix 37
AE1
B
294 316Right-handed alpha
Helix 38
AE2
B
320 325Right-handed 310
Helix 39
AE3
B
326 333Right-handed alpha
Helix 40
AE4
B
335 343Right-handed alpha
Helix 41
AE5
B
353 375Right-handed alpha
Helix 42
AE6
B
381 410Right-handed alpha
Helix 43
AE7
B
411 414Right-handed 310
Helix 44
AE8
C
8 33Right-handed alpha
Helix 45
AE9
C
33 54Right-handed alpha
Helix 46
AF1
C
59 70Right-handed alpha
Helix 47
AF2
C
87 91Right-handed 310
Helix 48
AF3
C
92 98Right-handed alpha
Helix 49
AF4
C
99 101Right-handed 310
Helix 50
AF5
C
177 181Right-handed 310
Helix 51
AF6
C
182 188Right-handed alpha
Helix 52
AF7
C
224 239Right-handed alpha
Helix 53
AF8
C
244 253Right-handed alpha
Helix 54
AF9
D
9 17Right-handed alpha
Helix 55
AG1
D
27 34Right-handed alpha
Helix 56
AG2
D
37 62Right-handed alpha
Helix 57
AG3
D
70 94Right-handed alpha
Helix 58
AG4
D
94 102Right-handed alpha
Helix 59
AG5
D
103 109Right-handed 310
Helix 60
AG6
D
111 121Right-handed alpha
Helix 61
AG7
D
122 125Right-handed 310
Helix 62
AG8
D
126 158Right-handed alpha
Helix 63
AG9
D
168 172Right-handed 310
Helix 64
AH1
D
178 182Right-handed 310
Helix 65
AH2
D
183 202Right-handed alpha
Helix 66
AH3
D
203 206Right-handed 310
Helix 67
AH4
E
2 13Right-handed alpha
Helix 68
AH5
E
24 31Right-handed alpha
Helix 69
AH6
E
34 63Right-handed alpha
Helix 70
AH7
E
75 77Right-handed 310
Helix 71
AH8
E
78 102Right-handed alpha
Helix 72
AH9
E
102 110Right-handed alpha
Helix 73
AI1
E
119 133Right-handed alpha
Helix 74
AI2
E
135 164Right-handed alpha
Helix 75
AI3
E
165 167Right-handed 310
Helix 76
AI4
E
175 191Right-handed alpha
Helix 77
AI5
F
2 30Right-handed alpha
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There are 8 sheets in PDB entry 8EW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
206 212parallel
Strand 3
A
188 193parallel
Strand 4
A
148 152parallel
Strand 5
A
236 240parallel
Strand 6
A
132 134anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
273 278parallel
Strand 3
A
259 265anti-parallel
Strand 4
A
322 327parallel
Strand 5
A
296 301anti-parallel
Strand 6
A
306 308anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
87 94anti-parallel
Strand 3
A
74 81anti-parallel
Strand 4
A
50 51anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
56 60anti-parallel
Strand 3
A
67 69anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
C
71 77anti-parallel
Strand 3
C
121 129anti-parallel
Strand 4
C
132 143anti-parallel
Strand 5
C
148 156anti-parallel
Strand 6
C
162 169anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 105first strand
Strand 2
C
117 119anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 206first strand
Strand 2
C
217 219parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 160first strand
Strand 2
D
163 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il