Analysis of interatomic Contacts of Structural Units in PDB entry:
8EXE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EXE entry

There are 2 chains in PDB entry 8EXE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 63GLN 392
B
 VAL 57SER 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8EXE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 80Right-handed alpha
Helix 2
AA2
A
96 111Right-handed alpha
Helix 3
AA3
A
122 130Right-handed alpha
Helix 4
AA4
A
150 168Right-handed alpha
Helix 5
AA5
A
180 187Right-handed alpha
Helix 6
AA6
A
237 246Right-handed alpha
Helix 7
AA7
A
267 277Right-handed alpha
Helix 8
AA8
A
284 288Right-handed 310
Helix 9
AA9
A
289 290Right-handed 310
Helix 10
AB1
A
291 302Right-handed alpha
Helix 11
AB2
A
310 326Right-handed alpha
Helix 12
AB3
A
328 342Right-handed alpha
Helix 13
AB4
A
348 366Right-handed alpha
Helix 14
AB5
A
370 391Right-handed alpha
Helix 15
AB6
B
67 84Right-handed alpha
Helix 16
AB7
B
136 153Right-handed alpha
Helix 17
AB8
B
159 170Right-handed alpha
Helix 18
AB9
B
174 183Right-handed alpha
Helix 19
AC1
B
188 206Right-handed alpha
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There are 3 sheets in PDB entry 8EXE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
93 95anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
234 236anti-parallel
Strand 3
A
119 121anti-parallel
Strand 4
A
139 143anti-parallel
Strand 5
A
213 221parallel
Strand 6
A
200 206anti-parallel
Strand 7
A
188 195anti-parallel
Strand 8
B
58 63anti-parallel
Strand 9
B
296 303anti-parallel
Strand 10
B
215 223anti-parallel
Strand 11
B
124 130anti-parallel
Strand 12
B
316 321anti-parallel
Strand 13
B
184 186parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
282 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il