Analysis of interatomic Contacts of Structural Units in PDB entry:
8EXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EXF entry

There are 2 chains in PDB entry 8EXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 63ASP 391
B
 VAL 57SER 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8EXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 80Right-handed alpha
Helix 2
AA2
A
96 111Right-handed alpha
Helix 3
AA3
A
122 130Right-handed alpha
Helix 4
AA4
A
152 168Right-handed alpha
Helix 5
AA5
A
174 178Right-handed 310
Helix 6
AA6
A
179 187Right-handed alpha
Helix 7
AA7
A
228 231Right-handed 310
Helix 8
AA8
A
237 247Right-handed alpha
Helix 9
AA9
A
267 278Right-handed alpha
Helix 10
AB1
A
284 288Right-handed 310
Helix 11
AB2
A
289 302Right-handed alpha
Helix 12
AB3
A
311 326Right-handed alpha
Helix 13
AB4
A
328 344Right-handed alpha
Helix 14
AB5
A
347 366Right-handed alpha
Helix 15
AB6
A
370 390Right-handed alpha
Helix 16
AB7
B
67 85Right-handed alpha
Helix 17
AB8
B
135 153Right-handed alpha
Helix 18
AB9
B
159 171Right-handed alpha
Helix 19
AC1
B
174 180Right-handed alpha
Helix 20
AC2
B
188 205Right-handed alpha
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There are 3 sheets in PDB entry 8EXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
93 95anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
233 236anti-parallel
Strand 3
A
117 121anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
214 221parallel
Strand 6
A
199 206anti-parallel
Strand 7
A
188 196anti-parallel
Strand 8
B
58 63anti-parallel
Strand 9
B
293 302anti-parallel
Strand 10
B
216 225anti-parallel
Strand 11
B
122 131anti-parallel
Strand 12
B
316 321anti-parallel
Strand 13
B
184 186parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
305 306parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il