Analysis of interatomic Contacts of Structural Units in PDB entry:
8EXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EXP entry

There are 2 chains in PDB entry 8EXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 585
B
 MET 1GLN 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8EXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 31Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
99 133Right-handed alpha
Helix 5
AA5
A
139 151Right-handed alpha
Helix 6
AA6
A
184 189Right-handed alpha
Helix 7
AA7
A
194 208Right-handed alpha
Helix 8
AA8
A
209 224Right-handed alpha
Helix 9
AA9
A
228 252Right-handed alpha
Helix 10
AB1
A
253 256Right-handed 310
Helix 11
AB2
A
257 268Right-handed alpha
Helix 12
AB3
A
289 300Right-handed alpha
Helix 13
AB4
A
308 327Right-handed alpha
Helix 14
AB5
A
332 337Right-handed 310
Helix 15
AB6
A
352 357Right-handed alpha
Helix 16
AB7
A
379 382Right-handed 310
Helix 17
AB8
A
387 390Right-handed 310
Helix 18
AB9
A
391 402Right-handed alpha
Helix 19
AC1
A
429 436Right-handed alpha
Helix 20
AC2
A
438 448Right-handed alpha
Helix 21
AC3
A
450 461Right-handed alpha
Helix 22
AC4
A
484 497Right-handed alpha
Helix 23
AC5
A
502 513Right-handed alpha
Helix 24
AC6
A
564 579Right-handed alpha
Helix 25
AC7
B
2 31Right-handed alpha
Helix 26
AC8
B
35 38Right-handed 310
Helix 27
AC9
B
39 46Right-handed alpha
Helix 28
AD1
B
99 133Right-handed alpha
Helix 29
AD2
B
139 151Right-handed alpha
Helix 30
AD3
B
184 189Right-handed alpha
Helix 31
AD4
B
194 208Right-handed alpha
Helix 32
AD5
B
209 224Right-handed alpha
Helix 33
AD6
B
228 252Right-handed alpha
Helix 34
AD7
B
253 256Right-handed 310
Helix 35
AD8
B
257 268Right-handed alpha
Helix 36
AD9
B
289 300Right-handed alpha
Helix 37
AE1
B
308 327Right-handed alpha
Helix 38
AE2
B
332 337Right-handed 310
Helix 39
AE3
B
352 357Right-handed alpha
Helix 40
AE4
B
379 382Right-handed 310
Helix 41
AE5
B
387 390Right-handed 310
Helix 42
AE6
B
391 402Right-handed alpha
Helix 43
AE7
B
429 436Right-handed alpha
Helix 44
AE8
B
438 448Right-handed alpha
Helix 45
AE9
B
450 461Right-handed alpha
Helix 46
AF1
B
484 497Right-handed alpha
Helix 47
AF2
B
502 513Right-handed alpha
Helix 48
AF3
B
564 579Right-handed alpha
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There are 8 sheets in PDB entry 8EXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
B
521 532parallel
Strand 3
B
535 547anti-parallel
Strand 4
B
551 558anti-parallel
Strand 5
B
361 367anti-parallel
Strand 6
B
372 376anti-parallel
Strand 7
B
346 350parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
B
521 532parallel
Strand 3
B
514 517anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
179 183parallel
Strand 4
A
171 173anti-parallel
Strand 5
A
282 283anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
372 376parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
551 558anti-parallel
Strand 5
A
535 547anti-parallel
Strand 6
A
521 532anti-parallel
Strand 7
A
514 517anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
372 376parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
551 558anti-parallel
Strand 5
A
535 547anti-parallel
Strand 6
A
521 532anti-parallel
Strand 7
B
90 94parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
482 483anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
160 164anti-parallel
Strand 3
B
179 183parallel
Strand 4
B
171 173anti-parallel
Strand 5
B
282 283anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 385first strand
Strand 2
B
482 483anti-parallel
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