Analysis of interatomic Contacts of Structural Units in PDB entry:
8EXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EXS entry

There are 2 chains in PDB entry 8EXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 585
B
 MET 1GLN 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8EXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 31Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
47 51Right-handed 310
Helix 5
AA5
A
99 134Right-handed alpha
Helix 6
AA6
A
139 152Right-handed alpha
Helix 7
AA7
A
185 188Right-handed 310
Helix 8
AA8
A
193 208Right-handed alpha
Helix 9
AA9
A
209 224Right-handed alpha
Helix 10
AB1
A
228 252Right-handed alpha
Helix 11
AB2
A
253 256Right-handed 310
Helix 12
AB3
A
257 271Right-handed alpha
Helix 13
AB4
A
289 300Right-handed alpha
Helix 14
AB5
A
307 327Right-handed alpha
Helix 15
AB6
A
332 337Right-handed alpha
Helix 16
AB7
A
352 357Right-handed alpha
Helix 17
AB8
A
377 382Right-handed alpha
Helix 18
AB9
A
387 390Right-handed 310
Helix 19
AC1
A
391 402Right-handed alpha
Helix 20
AC2
A
421 425Right-handed 310
Helix 21
AC3
A
429 436Right-handed alpha
Helix 22
AC4
A
438 449Right-handed alpha
Helix 23
AC5
A
450 461Right-handed alpha
Helix 24
AC6
A
483 497Right-handed alpha
Helix 25
AC7
A
502 513Right-handed alpha
Helix 26
AC8
A
564 579Right-handed alpha
Helix 27
AC9
B
2 31Right-handed alpha
Helix 28
AD1
B
35 38Right-handed 310
Helix 29
AD2
B
39 46Right-handed alpha
Helix 30
AD3
B
47 51Right-handed 310
Helix 31
AD4
B
99 134Right-handed alpha
Helix 32
AD5
B
139 152Right-handed alpha
Helix 33
AD6
B
185 188Right-handed 310
Helix 34
AD7
B
193 208Right-handed alpha
Helix 35
AD8
B
209 224Right-handed alpha
Helix 36
AD9
B
228 252Right-handed alpha
Helix 37
AE1
B
253 256Right-handed 310
Helix 38
AE2
B
257 271Right-handed alpha
Helix 39
AE3
B
289 300Right-handed alpha
Helix 40
AE4
B
307 327Right-handed alpha
Helix 41
AE5
B
332 337Right-handed alpha
Helix 42
AE6
B
352 357Right-handed alpha
Helix 43
AE7
B
377 382Right-handed alpha
Helix 44
AE8
B
387 390Right-handed 310
Helix 45
AE9
B
391 402Right-handed alpha
Helix 46
AF1
B
421 425Right-handed 310
Helix 47
AF2
B
429 436Right-handed alpha
Helix 48
AF3
B
438 449Right-handed alpha
Helix 49
AF4
B
450 461Right-handed alpha
Helix 50
AF5
B
483 497Right-handed alpha
Helix 51
AF6
B
502 513Right-handed alpha
Helix 52
AF7
B
564 579Right-handed alpha
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There are 4 sheets in PDB entry 8EXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
179 183parallel
Strand 3
A
171 173anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
372 376parallel
Strand 3
A
361 367anti-parallel
Strand 4
A
551 558anti-parallel
Strand 5
A
535 547anti-parallel
Strand 6
A
521 532anti-parallel
Strand 7
A
514 517anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
179 183parallel
Strand 3
B
171 173anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 350first strand
Strand 2
B
372 376parallel
Strand 3
B
361 367anti-parallel
Strand 4
B
551 558anti-parallel
Strand 5
B
535 547anti-parallel
Strand 6
B
521 532anti-parallel
Strand 7
B
514 517anti-parallel
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