Analysis of interatomic Contacts of Structural Units in PDB entry:
8EXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EXW entry

There are 2 chains in PDB entry 8EXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ALA 809
B
 MET 1LEU 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 8EXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
20 28Right-handed alpha
Helix 3
AA3
A
75 77Right-handed 310
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
90 94Right-handed 310
Helix 6
AA6
A
98 112Right-handed alpha
Helix 7
AA7
A
136 144Right-handed alpha
Helix 8
AA8
A
147 151Right-handed 310
Helix 9
AA9
A
154 170Right-handed alpha
Helix 10
AB1
A
184 200Right-handed alpha
Helix 11
AB2
A
214 221Right-handed alpha
Helix 12
AB3
A
221 230Right-handed alpha
Helix 13
AB4
A
268 273Right-handed 310
Helix 14
AB5
A
282 290Right-handed alpha
Helix 15
AB6
A
295 300Right-handed alpha
Helix 16
AB7
A
305 309Right-handed 310
Helix 17
AB8
A
323 338Right-handed alpha
Helix 18
AB9
A
341 359Right-handed alpha
Helix 19
AC1
A
367 371Right-handed 310
Helix 20
AC2
A
377 388Right-handed alpha
Helix 21
AC3
A
390 400Right-handed alpha
Helix 22
AC4
A
415 446Right-handed alpha
Helix 23
AC5
A
471 503Right-handed alpha
Helix 24
AC6
A
514 525Right-handed alpha
Helix 25
AC7
A
528 537Right-handed alpha
Helix 26
AC8
A
544 556Right-handed alpha
Helix 27
AC9
A
592 598Right-handed alpha
Helix 28
AD1
A
602 611Right-handed alpha
Helix 29
AD2
A
614 621Right-handed alpha
Helix 30
AD3
A
647 665Right-handed alpha
Helix 31
AD4
A
686 697Right-handed alpha
Helix 32
AD5
A
698 707Right-handed alpha
Helix 33
AD6
A
716 724Right-handed alpha
Helix 34
AD7
A
727 734Right-handed alpha
Helix 35
AD8
A
736 748Right-handed alpha
Helix 36
AD9
A
751 753Right-handed 310
Helix 37
AE1
A
767 806Right-handed alpha
Helix 38
AE2
B
5 20Right-handed alpha
Helix 39
AE3
B
30 38Right-handed alpha
Helix 40
AE4
B
43 49Right-handed alpha
Helix 41
AE5
B
62 76Right-handed alpha
Helix 42
AE6
B
81 91Right-handed alpha
Helix 43
AE7
B
102 112Right-handed alpha
Helix 44
AE8
B
117 129Right-handed alpha
Helix 45
AE9
B
140 148Right-handed alpha
Helix 46
AF1
B
150 154Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 8EXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
46 56anti-parallel
Strand 3
A
59 64anti-parallel
Strand 4
A
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
667 674parallel
Strand 4
A
173 178parallel
Strand 5
A
454 460parallel
Strand 6
A
244 251anti-parallel
Strand 7
A
257 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 563first strand
Strand 2
A
577 581anti-parallel
Strand 3
A
584 588anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 715first strand
Strand 2
A
761 764anti-parallel
Strand 3
A
755 757anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
137 139anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il