Analysis of interatomic Contacts of Structural Units in PDB entry:
8EXX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EXX entry

There are 4 chains in PDB entry 8EXX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 60	ALA 1235
B	GLY 28	LYS 319
P	C -26	T -1
T	A -3	G 26

There are 47 helices in PDB entry 8EXX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	175	Right-handed alpha
Helix 2	AA2	A	210	214	Right-handed 310
Helix 3	AA3	A	224	234	Right-handed alpha
Helix 4	AA4	A	244	246	Right-handed 310
Helix 5	AA5	A	277	282	Right-handed alpha
Helix 6	AA6	A	300	305	Right-handed alpha
Helix 7	AA7	A	331	335	Right-handed 310
Helix 8	AA8	A	420	429	Right-handed alpha
Helix 9	AA9	A	442	457	Right-handed alpha
Helix 10	AB1	A	470	483	Right-handed alpha
Helix 11	AB2	A	524	533	Right-handed alpha
Helix 12	AB3	A	539	549	Right-handed alpha
Helix 13	AB4	A	556	558	Right-handed 310
Helix 14	AB5	A	559	564	Right-handed alpha
Helix 15	AB6	A	567	593	Right-handed alpha
Helix 16	AB7	A	593	606	Right-handed alpha
Helix 17	AB8	A	608	615	Right-handed alpha
Helix 18	AB9	A	617	630	Right-handed alpha
Helix 19	AC1	A	720	729	Right-handed alpha
Helix 20	AC2	A	732	736	Right-handed 310
Helix 21	AC3	A	773	791	Right-handed alpha
Helix 22	AC4	A	792	795	Right-handed 310
Helix 23	AC5	A	799	823	Right-handed alpha
Helix 24	AC6	A	830	856	Right-handed alpha
Helix 25	AC7	A	858	864	Right-handed alpha
Helix 26	AC8	A	866	871	Right-handed 310
Helix 27	AC9	A	901	918	Right-handed alpha
Helix 28	AD1	A	963	979	Right-handed alpha
Helix 29	AD2	A	981	990	Right-handed alpha
Helix 30	AD3	A	994	999	Right-handed 310
Helix 31	AD4	A	1009	1022	Right-handed alpha
Helix 32	AD5	A	1027	1031	Right-handed 310
Helix 33	AD6	A	1049	1061	Right-handed alpha
Helix 34	AD7	A	1081	1091	Right-handed alpha
Helix 35	AD8	A	1139	1141	Right-handed 310
Helix 36	AD9	A	1145	1152	Right-handed alpha
Helix 37	AE1	A	1159	1174	Right-handed alpha
Helix 38	AE2	A	1175	1177	Right-handed 310
Helix 39	AE3	A	1180	1189	Right-handed alpha
Helix 40	AE4	A	1199	1209	Right-handed alpha
Helix 41	AE5	A	1222	1235	Right-handed alpha
Helix 42	AE6	B	36	48	Right-handed alpha
Helix 43	AE7	B	82	86	Right-handed 310
Helix 44	AE8	B	103	105	Right-handed 310
Helix 45	AE9	B	109	113	Right-handed 310
Helix 46	AF1	B	183	192	Right-handed alpha
Helix 47	AF2	B	273	282	Right-handed alpha

There are 18 sheets in PDB entry 8EXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	98	99	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	148	155	anti-parallel
Strand 3	A	181	187	anti-parallel
Strand 4	A	193	198	anti-parallel
Strand 5	A	341	343	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	208	first strand
Strand 2	A	266	273	anti-parallel
Strand 3	A	248	257	anti-parallel
Strand 4	A	634	635	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	350	351	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	372	first strand
Strand 2	A	390	400	anti-parallel
Strand 3	A	405	414	anti-parallel
Strand 4	A	436	440	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	372	first strand
Strand 2	A	390	400	anti-parallel
Strand 3	A	365	367	anti-parallel
Strand 4	A	461	463	parallel
Strand 5	A	521	522	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	514	517	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	713	718	anti-parallel
Strand 4	A	890	895	anti-parallel
Strand 5	A	879	882	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	950	953	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	755	first strand
Strand 2	A	762	765	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1071	1076	anti-parallel
Strand 3	A	1143	1144	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1214	first strand
Strand 2	B	167	169	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	31	35	anti-parallel
Strand 3	B	120	127	anti-parallel
Strand 4	B	135	144	anti-parallel
Strand 5	B	148	151	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	31	35	anti-parallel
Strand 3	B	120	127	anti-parallel
Strand 4	B	135	144	anti-parallel
Strand 5	B	157	160	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	58	62	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	76	80	anti-parallel
Strand 5	B	310	314	anti-parallel
Strand 6	B	298	303	anti-parallel
Strand 7	B	286	291	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	106	107	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	255	259	anti-parallel
Strand 3	B	222	224	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	213	first strand
Strand 2	B	200	204	anti-parallel
Strand 3	B	265	269	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EXX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EXX