Analysis of interatomic Contacts of Structural Units in PDB entry:
8EYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EYM entry

There are 2 chains in PDB entry 8EYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ASP 322
B
 THR 3THR 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8EYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
14 26Right-handed alpha
Helix 3
AA3
A
26 41Right-handed alpha
Helix 4
AA4
A
51 69Right-handed alpha
Helix 5
AA5
A
77 82Right-handed alpha
Helix 6
AA6
A
103 116Right-handed alpha
Helix 7
AA7
A
129 134Right-handed 310
Helix 8
AA8
A
152 171Right-handed alpha
Helix 9
AA9
A
172 192Right-handed alpha
Helix 10
AB1
A
197 202Right-handed 310
Helix 11
AB2
A
213 231Right-handed alpha
Helix 12
AB3
A
240 244Right-handed 310
Helix 13
AB4
A
245 252Right-handed 310
Helix 14
AB5
A
265 279Right-handed alpha
Helix 15
AB6
A
297 317Right-handed alpha
Helix 16
AB7
B
6 14Right-handed alpha
Helix 17
AB8
B
14 26Right-handed alpha
Helix 18
AB9
B
26 41Right-handed alpha
Helix 19
AC1
B
50 69Right-handed alpha
Helix 20
AC2
B
77 82Right-handed alpha
Helix 21
AC3
B
103 116Right-handed alpha
Helix 22
AC4
B
129 134Right-handed 310
Helix 23
AC5
B
152 171Right-handed alpha
Helix 24
AC6
B
172 181Right-handed alpha
Helix 25
AC7
B
181 192Right-handed alpha
Helix 26
AC8
B
197 202Right-handed alpha
Helix 27
AC9
B
213 231Right-handed alpha
Helix 28
AD1
B
240 244Right-handed 310
Helix 29
AD2
B
245 252Right-handed 310
Helix 30
AD3
B
265 279Right-handed alpha
Helix 31
AD4
B
297 317Right-handed alpha
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There are 4 sheets in PDB entry 8EYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
45 48parallel
Strand 3
A
93 98parallel
Strand 4
A
119 124parallel
Strand 5
A
137 140parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 238first strand
Strand 2
A
206 211parallel
Strand 3
A
255 259parallel
Strand 4
A
282 286parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
45 48parallel
Strand 3
B
93 98parallel
Strand 4
B
119 124parallel
Strand 5
B
137 140parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 238first strand
Strand 2
B
206 211parallel
Strand 3
B
255 259parallel
Strand 4
B
282 286parallel
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