Analysis of interatomic Contacts of Structural Units in PDB entry:
8EYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EYP entry

There are 3 chains in PDB entry 8EYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 267
B
 THR 1002HIS 1086
B
 THR 1088GLU 1396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8EYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 14Right-handed alpha
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
61 74Right-handed alpha
Helix 4
AA4
A
77 92Right-handed alpha
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
110 122Right-handed alpha
Helix 7
AA7
A
132 135Right-handed 310
Helix 8
AA8
A
136 146Right-handed alpha
Helix 9
AA9
A
159 170Right-handed alpha
Helix 10
AB1
A
192 204Right-handed alpha
Helix 11
AB2
A
216 226Right-handed alpha
Helix 12
AB3
A
235 244Right-handed alpha
Helix 13
AB4
A
247 265Right-handed alpha
Helix 14
AB5
B
1018 1020Right-handed 310
Helix 15
AB6
B
1021 1038Right-handed alpha
Helix 16
AB7
B
1038 1052Right-handed alpha
Helix 17
AB8
B
1079 1081Right-handed 310
Helix 18
AB9
B
1087 1101Right-handed alpha
Helix 19
AC1
B
1113 1127Right-handed alpha
Helix 20
AC2
B
1136 1140Right-handed alpha
Helix 21
AC3
B
1142 1152Right-handed alpha
Helix 22
AC4
B
1165 1181Right-handed alpha
Helix 23
AC5
B
1196 1204Right-handed alpha
Helix 24
AC6
B
1206 1221Right-handed alpha
Helix 25
AC7
B
1234 1242Right-handed alpha
Helix 26
AC8
B
1243 1245Right-handed 310
Helix 27
AC9
B
1261 1265Right-handed 310
Helix 28
AD1
B
1269 1274Right-handed alpha
Helix 29
AD2
B
1301 1305Right-handed 310
Helix 30
AD3
B
1310 1319Right-handed alpha
Helix 31
AD4
B
1329 1344Right-handed alpha
Helix 32
AD5
B
1348 1365Right-handed alpha
Helix 33
AD6
B
1380 1382Right-handed 310
Helix 34
AD7
B
1383 1393Right-handed alpha
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There are 5 sheets in PDB entry 8EYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
125 128parallel
Strand 3
A
97 101parallel
Strand 4
A
48 51parallel
Strand 5
A
18 24parallel
Strand 6
A
230 233parallel
Strand 7
A
208 210parallel
Strand 8
A
174 176parallel
Strand 9
A
153 154parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1008 1009first strand
Strand 2
B
1012 1013anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1059 1061first strand
Strand 2
B
1071 1077anti-parallel
Strand 3
B
1370 1376parallel
Strand 4
B
1226 1230parallel
Strand 5
B
1251 1259parallel
Strand 6
B
1322 1328parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1155 1159first strand
Strand 2
B
1129 1135parallel
Strand 3
B
1105 1109parallel
Strand 4
B
1184 1186parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1275 1279first strand
Strand 2
B
1282 1286anti-parallel
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