Analysis of interatomic Contacts of Structural Units in PDB entry:
8EYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EYR entry

There are 4 chains in PDB entry 8EYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1	ALA 901
A	GLU 1	ALA 901
C	THR 4	PRO 63
D	THR 4	PRO 63

There are 30 helices in PDB entry 8EYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	12	20	Right-handed 310
Helix 2	AA2	B	133	137	Right-handed 310
Helix 3	AA3	B	144	149	Right-handed alpha
Helix 4	AA4	B	248	254	Right-handed alpha
Helix 5	AA5	B	314	320	Right-handed alpha
Helix 6	AA6	B	341	350	Right-handed alpha
Helix 7	AA7	B	426	438	Right-handed alpha
Helix 8	AA8	B	439	443	Right-handed 310
Helix 9	AA9	B	625	631	Right-handed alpha
Helix 10	AB1	B	680	706	Right-handed alpha
Helix 11	AB2	B	856	863	Right-handed alpha
Helix 12	AB3	A	12	20	Right-handed 310
Helix 13	AB4	A	133	137	Right-handed 310
Helix 14	AB5	A	144	149	Right-handed alpha
Helix 15	AB6	A	314	320	Right-handed alpha
Helix 16	AB7	A	341	350	Right-handed alpha
Helix 17	AB8	A	426	438	Right-handed alpha
Helix 18	AB9	A	439	443	Right-handed 310
Helix 19	AC1	A	625	631	Right-handed alpha
Helix 20	AC2	A	680	706	Right-handed alpha
Helix 21	AC3	A	856	863	Right-handed alpha
Helix 22	AC4	C	7	19	Right-handed alpha
Helix 23	AC5	C	20	22	Right-handed 310
Helix 24	AC6	C	43	48	Right-handed alpha
Helix 25	AC7	C	53	58	Right-handed alpha
Helix 26	AC8	C	59	61	Right-handed 310
Helix 27	AC9	D	7	19	Right-handed alpha
Helix 28	AD1	D	43	48	Right-handed alpha
Helix 29	AD2	D	53	58	Right-handed alpha
Helix 30	AD3	D	59	61	Right-handed 310

There are 32 sheets in PDB entry 8EYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	24	25	parallel
Strand 3	B	50	51	parallel
Strand 4	B	75	76	parallel
Strand 5	B	105	106	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	29	34	parallel
Strand 3	B	55	60	parallel
Strand 4	B	85	90	parallel
Strand 5	B	110	116	parallel
Strand 6	B	138	142	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	171	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	245	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	269	first strand
Strand 2	B	272	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	287	293	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	312	first strand
Strand 2	B	331	333	parallel
Strand 3	B	359	362	parallel
Strand 4	B	391	394	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	354	357	parallel
Strand 3	B	378	383	parallel
Strand 4	B	411	412	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	464	first strand
Strand 2	B	568	570	parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	493	500	anti-parallel
Strand 5	B	522	525	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	464	first strand
Strand 2	B	568	570	parallel
Strand 3	B	547	555	anti-parallel
Strand 4	B	573	576	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	471	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	536	540	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	594	first strand
Strand 2	B	597	601	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	752	756	first strand
Strand 2	B	612	621	anti-parallel
Strand 3	B	773	782	anti-parallel
Strand 4	B	794	799	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	816	first strand
Strand 2	B	824	826	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	841	844	first strand
Strand 2	B	851	854	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	881	884	first strand
Strand 2	B	887	891	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	24	25	parallel
Strand 3	A	50	51	parallel
Strand 4	A	75	76	parallel
Strand 5	A	105	106	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	28	34	parallel
Strand 3	A	55	60	parallel
Strand 4	A	85	90	parallel
Strand 5	A	110	116	parallel
Strand 6	A	138	142	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	245	247	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	269	first strand
Strand 2	A	272	274	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	287	293	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	330	333	parallel
Strand 3	A	359	362	parallel
Strand 4	A	392	394	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	354	355	parallel
Strand 3	A	378	379	parallel
Strand 4	A	411	412	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	568	570	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	471	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	536	540	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	525	first strand
Strand 2	A	493	500	anti-parallel
Strand 3	A	547	555	anti-parallel
Strand 4	A	573	576	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	594	first strand
Strand 2	A	597	601	anti-parallel
Strand 3	A	763	765	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	756	first strand
Strand 2	A	612	620	anti-parallel
Strand 3	A	780	782	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	777	first strand
Strand 2	A	795	796	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	814	816	first strand
Strand 2	A	824	826	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	841	844	first strand
Strand 2	A	851	854	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	881	884	first strand
Strand 2	A	887	891	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EYR