Analysis of interatomic Contacts of Structural Units in PDB entry:
8EYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EYZ entry

There are 12 chains in PDB entry 8EYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LYS 226
B	LYS 3	THR 223
C	LYS 4	GLY 222
D	LYS 3	THR 223
E	ASP 2	PRO 225
F	LYS 3	PRO 225
G	LYS 3	GLU 224
H	LYS 4	GLU 224
I	LYS 4	LYS 226
J	LYS 3	GLU 224
K	LYS 3	LYS 226
L	LYS 4	THR 223

There are119 helices in PDB entry 8EYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	39	Right-handed alpha
Helix 2	AA2	A	49	51	Right-handed 310
Helix 3	AA3	A	52	59	Right-handed alpha
Helix 4	AA4	A	72	77	Right-handed alpha
Helix 5	AA5	A	103	108	Right-handed 310
Helix 6	AA6	A	119	128	Right-handed alpha
Helix 7	AA7	A	138	148	Right-handed alpha
Helix 8	AA8	A	158	168	Right-handed alpha
Helix 9	AA9	A	193	211	Right-handed alpha
Helix 10	AB1	A	211	222	Right-handed alpha
Helix 11	AB2	B	26	40	Right-handed alpha
Helix 12	AB3	B	49	51	Right-handed 310
Helix 13	AB4	B	52	59	Right-handed alpha
Helix 14	AB5	B	103	108	Right-handed 310
Helix 15	AB6	B	118	128	Right-handed alpha
Helix 16	AB7	B	138	148	Right-handed alpha
Helix 17	AB8	B	158	169	Right-handed alpha
Helix 18	AB9	B	193	210	Right-handed alpha
Helix 19	AC1	B	211	222	Right-handed alpha
Helix 20	AC2	C	26	40	Right-handed alpha
Helix 21	AC3	C	49	51	Right-handed 310
Helix 22	AC4	C	52	59	Right-handed alpha
Helix 23	AC5	C	72	77	Right-handed alpha
Helix 24	AC6	C	103	108	Right-handed 310
Helix 25	AC7	C	118	128	Right-handed alpha
Helix 26	AC8	C	138	148	Right-handed alpha
Helix 27	AC9	C	158	168	Right-handed alpha
Helix 28	AD1	C	193	210	Right-handed alpha
Helix 29	AD2	C	211	222	Right-handed alpha
Helix 30	AD3	D	26	40	Right-handed alpha
Helix 31	AD4	D	49	51	Right-handed 310
Helix 32	AD5	D	52	59	Right-handed alpha
Helix 33	AD6	D	72	77	Right-handed alpha
Helix 34	AD7	D	103	108	Right-handed 310
Helix 35	AD8	D	118	128	Right-handed alpha
Helix 36	AD9	D	138	148	Right-handed alpha
Helix 37	AE1	D	158	168	Right-handed alpha
Helix 38	AE2	D	193	210	Right-handed alpha
Helix 39	AE3	D	211	221	Right-handed alpha
Helix 40	AE4	E	26	40	Right-handed alpha
Helix 41	AE5	E	49	51	Right-handed 310
Helix 42	AE6	E	52	59	Right-handed alpha
Helix 43	AE7	E	74	78	Right-handed 310
Helix 44	AE8	E	103	108	Right-handed 310
Helix 45	AE9	E	118	128	Right-handed alpha
Helix 46	AF1	E	139	148	Right-handed alpha
Helix 47	AF2	E	158	168	Right-handed alpha
Helix 48	AF3	E	193	210	Right-handed alpha
Helix 49	AF4	E	211	222	Right-handed alpha
Helix 50	AF5	F	26	39	Right-handed alpha
Helix 51	AF6	F	49	51	Right-handed 310
Helix 52	AF7	F	52	59	Right-handed alpha
Helix 53	AF8	F	72	77	Right-handed alpha
Helix 54	AF9	F	103	108	Right-handed 310
Helix 55	AG1	F	118	128	Right-handed alpha
Helix 56	AG2	F	138	148	Right-handed alpha
Helix 57	AG3	F	158	169	Right-handed alpha
Helix 58	AG4	F	193	210	Right-handed alpha
Helix 59	AG5	F	211	222	Right-handed alpha
Helix 60	AG6	G	26	40	Right-handed alpha
Helix 61	AG7	G	49	51	Right-handed 310
Helix 62	AG8	G	52	59	Right-handed alpha
Helix 63	AG9	G	72	77	Right-handed alpha
Helix 64	AH1	G	103	107	Right-handed 310
Helix 65	AH2	G	118	128	Right-handed alpha
Helix 66	AH3	G	138	148	Right-handed alpha
Helix 67	AH4	G	158	168	Right-handed alpha
Helix 68	AH5	G	193	210	Right-handed alpha
Helix 69	AH6	G	211	221	Right-handed alpha
Helix 70	AH7	H	26	40	Right-handed alpha
Helix 71	AH8	H	49	51	Right-handed 310
Helix 72	AH9	H	52	59	Right-handed alpha
Helix 73	AI1	H	72	77	Right-handed alpha
Helix 74	AI2	H	103	108	Right-handed 310
Helix 75	AI3	H	118	128	Right-handed alpha
Helix 76	AI4	H	138	148	Right-handed alpha
Helix 77	AI5	H	158	168	Right-handed alpha
Helix 78	AI6	H	193	210	Right-handed alpha
Helix 79	AI7	H	211	222	Right-handed alpha
Helix 80	AI8	I	26	39	Right-handed alpha
Helix 81	AI9	I	49	51	Right-handed 310
Helix 82	AJ1	I	52	59	Right-handed alpha
Helix 83	AJ2	I	72	77	Right-handed alpha
Helix 84	AJ3	I	103	108	Right-handed alpha
Helix 85	AJ4	I	118	128	Right-handed alpha
Helix 86	AJ5	I	138	148	Right-handed alpha
Helix 87	AJ6	I	158	168	Right-handed alpha
Helix 88	AJ7	I	193	210	Right-handed alpha
Helix 89	AJ8	I	211	222	Right-handed alpha
Helix 90	AJ9	J	26	40	Right-handed alpha
Helix 91	AK1	J	49	51	Right-handed 310
Helix 92	AK2	J	52	59	Right-handed alpha
Helix 93	AK3	J	72	77	Right-handed alpha
Helix 94	AK4	J	103	108	Right-handed 310
Helix 95	AK5	J	118	128	Right-handed alpha
Helix 96	AK6	J	138	148	Right-handed alpha
Helix 97	AK7	J	158	168	Right-handed alpha
Helix 98	AK8	J	193	210	Right-handed alpha
Helix 99	AK9	J	211	222	Right-handed alpha
Helix 100	AL1	K	26	40	Right-handed alpha
Helix 101	AL2	K	49	51	Right-handed 310
Helix 102	AL3	K	52	59	Right-handed alpha
Helix 103	AL4	K	72	77	Right-handed alpha
Helix 104	AL5	K	103	108	Right-handed 310
Helix 105	AL6	K	118	128	Right-handed alpha
Helix 106	AL7	K	138	148	Right-handed alpha
Helix 107	AL8	K	158	169	Right-handed alpha
Helix 108	AL9	K	193	210	Right-handed alpha
Helix 109	AM1	K	211	221	Right-handed alpha
Helix 110	AM2	L	26	40	Right-handed alpha
Helix 111	AM3	L	49	51	Right-handed 310
Helix 112	AM4	L	52	59	Right-handed alpha
Helix 113	AM5	L	72	77	Right-handed alpha
Helix 114	AM6	L	103	108	Right-handed 310
Helix 115	AM7	L	118	128	Right-handed alpha
Helix 116	AM8	L	138	148	Right-handed alpha
Helix 117	AM9	L	158	168	Right-handed alpha
Helix 118	AN1	L	193	211	Right-handed alpha
Helix 119	AN2	L	211	222	Right-handed alpha

There are 44 sheets in PDB entry 8EYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	48	first strand
Strand 2	A	4	10	parallel
Strand 3	A	64	65	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	23	25	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	188	190	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	111	115	parallel
Strand 3	A	153	157	parallel
Strand 4	A	86	95	anti-parallel
Strand 5	A	173	185	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	48	first strand
Strand 2	B	5	10	parallel
Strand 3	B	64	65	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	23	25	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	188	190	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	111	115	parallel
Strand 3	B	153	157	parallel
Strand 4	B	86	95	anti-parallel
Strand 5	B	173	185	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	48	first strand
Strand 2	C	5	10	parallel
Strand 3	C	64	65	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	23	25	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	111	115	parallel
Strand 3	C	153	157	parallel
Strand 4	C	80	95	anti-parallel
Strand 5	C	173	189	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	48	first strand
Strand 2	D	5	10	parallel
Strand 3	D	64	65	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	23	25	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	188	189	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	111	115	parallel
Strand 3	D	153	157	parallel
Strand 4	D	86	95	anti-parallel
Strand 5	D	173	185	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	48	first strand
Strand 2	E	4	10	parallel
Strand 3	E	64	65	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	23	25	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	111	115	parallel
Strand 3	E	153	157	parallel
Strand 4	E	80	95	anti-parallel
Strand 5	E	173	189	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	48	first strand
Strand 2	F	5	10	parallel
Strand 3	F	64	66	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	23	25	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	188	189	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	136	first strand
Strand 2	F	111	115	parallel
Strand 3	F	153	157	parallel
Strand 4	F	86	95	anti-parallel
Strand 5	F	173	185	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	48	first strand
Strand 2	G	5	10	parallel
Strand 3	G	64	66	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	17	20	anti-parallel
Strand 3	G	23	25	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	81	first strand
Strand 2	G	188	190	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	136	first strand
Strand 2	G	111	115	parallel
Strand 3	G	153	157	parallel
Strand 4	G	86	95	anti-parallel
Strand 5	G	173	185	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	48	first strand
Strand 2	H	5	10	parallel
Strand 3	H	64	65	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	23	25	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	81	first strand
Strand 2	H	188	189	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	111	115	parallel
Strand 3	H	153	157	parallel
Strand 4	H	86	95	anti-parallel
Strand 5	H	173	185	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	48	first strand
Strand 2	I	5	10	parallel
Strand 3	I	64	65	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	20	first strand
Strand 2	I	23	25	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	81	first strand
Strand 2	I	188	190	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	132	136	first strand
Strand 2	I	111	115	parallel
Strand 3	I	153	157	parallel
Strand 4	I	86	95	anti-parallel
Strand 5	I	173	185	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	48	first strand
Strand 2	J	5	10	parallel
Strand 3	J	64	65	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	20	first strand
Strand 2	J	23	25	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	80	81	first strand
Strand 2	J	188	189	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	132	136	first strand
Strand 2	J	111	115	parallel
Strand 3	J	153	157	parallel
Strand 4	J	86	95	anti-parallel
Strand 5	J	173	185	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	48	first strand
Strand 2	K	5	10	parallel
Strand 3	K	64	65	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	20	first strand
Strand 2	K	23	25	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	132	136	first strand
Strand 2	K	111	115	parallel
Strand 3	K	153	157	parallel
Strand 4	K	79	95	anti-parallel
Strand 5	K	173	190	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	48	first strand
Strand 2	L	5	10	parallel
Strand 3	L	64	65	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	20	first strand
Strand 2	L	23	25	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	132	136	first strand
Strand 2	L	111	115	parallel
Strand 3	L	153	157	parallel
Strand 4	L	80	95	anti-parallel
Strand 5	L	173	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EYZ