Analysis of interatomic Contacts of Structural Units in PDB entry:
8EZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EZF entry

There is 1 chain in PDB entry 8EZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 1ALA 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8EZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 32Right-handed 310
Helix 2
AA2
B
38 49Right-handed alpha
Helix 3
AA3
B
55 61Right-handed alpha
Helix 4
AA4
B
78 94Right-handed alpha
Helix 5
AA5
B
112 121Right-handed alpha
Helix 6
AA6
B
121 128Right-handed alpha
Helix 7
AA7
B
137 139Right-handed 310
Helix 8
AA8
B
157 161Right-handed alpha
Helix 9
AA9
B
181 186Right-handed 310
Helix 10
AB1
B
192 200Right-handed alpha
Helix 11
AB2
B
201 206Right-handed alpha
Helix 12
AB3
B
218 231Right-handed alpha
Helix 13
AB4
B
256 270Right-handed alpha
Helix 14
AB5
B
292 306Right-handed alpha
Helix 15
AB6
B
325 334Right-handed alpha
Helix 16
AB7
B
337 343Right-handed alpha
Helix 17
AB8
B
356 370Right-handed alpha
Helix 18
AB9
B
380 387Right-handed alpha
Helix 19
AC1
B
394 407Right-handed alpha
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There are 6 sheets in PDB entry 8EZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
11 17anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
412 414parallel
Strand 3
B
277 283parallel
Strand 4
B
307 316parallel
Strand 5
B
371 375parallel
Strand 6
B
390 392parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
98 104parallel
Strand 3
B
65 71parallel
Strand 4
B
164 170parallel
Strand 5
B
233 241parallel
Strand 6
B
247 253anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 146first strand
Strand 2
B
152 156anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
178 179anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 273first strand
Strand 2
B
422 424parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il