Analysis of interatomic Contacts of Structural Units in PDB entry:
8EZJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EZJ entry

There are 4 chains in PDB entry 8EZJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 7	SER 1417
B	VAL 7	SER 1417
C	GLU 18	GLN 182
D	GLU 18	GLN 182

There are149 helices in PDB entry 8EZJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	30	Right-handed alpha
Helix 2	AA2	A	71	85	Right-handed alpha
Helix 3	AA3	A	93	107	Right-handed alpha
Helix 4	AA4	A	111	129	Right-handed alpha
Helix 5	AA5	A	137	151	Right-handed alpha
Helix 6	AA6	A	158	179	Right-handed alpha
Helix 7	AA7	A	179	184	Right-handed alpha
Helix 8	AA8	A	186	202	Right-handed alpha
Helix 9	AA9	A	207	231	Right-handed alpha
Helix 10	AB1	A	328	344	Right-handed alpha
Helix 11	AB2	A	345	348	Right-handed 310
Helix 12	AB3	A	352	371	Right-handed alpha
Helix 13	AB4	A	377	386	Right-handed alpha
Helix 14	AB5	A	386	398	Right-handed alpha
Helix 15	AB6	A	401	419	Right-handed alpha
Helix 16	AB7	A	420	422	Right-handed 310
Helix 17	AB8	A	423	439	Right-handed alpha
Helix 18	AB9	A	455	472	Right-handed alpha
Helix 19	AC1	A	475	484	Right-handed alpha
Helix 20	AC2	A	493	506	Right-handed alpha
Helix 21	AC3	A	506	511	Right-handed alpha
Helix 22	AC4	A	516	535	Right-handed alpha
Helix 23	AC5	A	540	546	Right-handed alpha
Helix 24	AC6	A	551	558	Right-handed alpha
Helix 25	AC7	A	559	573	Right-handed alpha
Helix 26	AC8	A	573	584	Right-handed alpha
Helix 27	AC9	A	591	602	Right-handed alpha
Helix 28	AD1	A	607	615	Right-handed alpha
Helix 29	AD2	A	617	619	Right-handed 310
Helix 30	AD3	A	620	630	Right-handed alpha
Helix 31	AD4	A	637	648	Right-handed alpha
Helix 32	AD5	A	654	672	Right-handed alpha
Helix 33	AD6	A	695	713	Right-handed alpha
Helix 34	AD7	A	727	731	Right-handed 310
Helix 35	AD8	A	740	753	Right-handed alpha
Helix 36	AD9	A	768	777	Right-handed alpha
Helix 37	AE1	A	793	797	Right-handed 310
Helix 38	AE2	A	798	828	Right-handed alpha
Helix 39	AE3	A	830	852	Right-handed alpha
Helix 40	AE4	A	853	867	Right-handed alpha
Helix 41	AE5	A	906	914	Right-handed alpha
Helix 42	AE6	A	915	932	Right-handed alpha
Helix 43	AE7	A	939	956	Right-handed alpha
Helix 44	AE8	A	964	971	Right-handed alpha
Helix 45	AE9	A	1010	1026	Right-handed alpha
Helix 46	AF1	A	1027	1033	Right-handed alpha
Helix 47	AF2	A	1040	1050	Right-handed alpha
Helix 48	AF3	A	1059	1061	Right-handed 310
Helix 49	AF4	A	1062	1081	Right-handed alpha
Helix 50	AF5	A	1084	1100	Right-handed alpha
Helix 51	AF6	A	1105	1123	Right-handed alpha
Helix 52	AF7	A	1126	1141	Right-handed alpha
Helix 53	AF8	A	1147	1151	Right-handed 310
Helix 54	AF9	A	1154	1166	Right-handed alpha
Helix 55	AG1	A	1172	1177	Right-handed alpha
Helix 56	AG2	A	1179	1190	Right-handed alpha
Helix 57	AG3	A	1194	1209	Right-handed alpha
Helix 58	AG4	A	1217	1230	Right-handed alpha
Helix 59	AG5	A	1231	1247	Right-handed alpha
Helix 60	AG6	A	1258	1276	Right-handed alpha
Helix 61	AG7	A	1284	1299	Right-handed alpha
Helix 62	AG8	A	1302	1320	Right-handed alpha
Helix 63	AG9	A	1330	1338	Right-handed alpha
Helix 64	AH1	A	1338	1344	Right-handed alpha
Helix 65	AH2	A	1348	1350	Right-handed 310
Helix 66	AH3	A	1351	1373	Right-handed alpha
Helix 67	AH4	A	1378	1391	Right-handed alpha
Helix 68	AH5	A	1395	1417	Right-handed alpha
Helix 69	AH6	B	11	30	Right-handed alpha
Helix 70	AH7	B	71	84	Right-handed alpha
Helix 71	AH8	B	93	107	Right-handed alpha
Helix 72	AH9	B	111	128	Right-handed alpha
Helix 73	AI1	B	137	150	Right-handed alpha
Helix 74	AI2	B	159	178	Right-handed alpha
Helix 75	AI3	B	179	184	Right-handed alpha
Helix 76	AI4	B	186	202	Right-handed alpha
Helix 77	AI5	B	208	230	Right-handed alpha
Helix 78	AI6	B	328	343	Right-handed alpha
Helix 79	AI7	B	344	348	Right-handed 310
Helix 80	AI8	B	352	371	Right-handed alpha
Helix 81	AI9	B	373	376	Right-handed 310
Helix 82	AJ1	B	377	386	Right-handed alpha
Helix 83	AJ2	B	386	398	Right-handed alpha
Helix 84	AJ3	B	401	419	Right-handed alpha
Helix 85	AJ4	B	424	439	Right-handed alpha
Helix 86	AJ5	B	456	471	Right-handed alpha
Helix 87	AJ6	B	475	485	Right-handed alpha
Helix 88	AJ7	B	493	505	Right-handed alpha
Helix 89	AJ8	B	506	511	Right-handed alpha
Helix 90	AJ9	B	516	536	Right-handed alpha
Helix 91	AK1	B	540	547	Right-handed alpha
Helix 92	AK2	B	551	558	Right-handed alpha
Helix 93	AK3	B	559	573	Right-handed alpha
Helix 94	AK4	B	573	584	Right-handed alpha
Helix 95	AK5	B	591	601	Right-handed alpha
Helix 96	AK6	B	607	616	Right-handed alpha
Helix 97	AK7	B	621	630	Right-handed alpha
Helix 98	AK8	B	637	647	Right-handed alpha
Helix 99	AK9	B	656	673	Right-handed alpha
Helix 100	AL1	B	696	713	Right-handed alpha
Helix 101	AL2	B	722	730	Right-handed alpha
Helix 102	AL3	B	740	754	Right-handed alpha
Helix 103	AL4	B	767	778	Right-handed alpha
Helix 104	AL5	B	792	797	Right-handed 310
Helix 105	AL6	B	798	828	Right-handed alpha
Helix 106	AL7	B	830	851	Right-handed alpha
Helix 107	AL8	B	853	868	Right-handed alpha
Helix 108	AL9	B	906	914	Right-handed alpha
Helix 109	AM1	B	915	932	Right-handed alpha
Helix 110	AM2	B	939	956	Right-handed alpha
Helix 111	AM3	B	964	971	Right-handed alpha
Helix 112	AM4	B	1009	1027	Right-handed alpha
Helix 113	AM5	B	1028	1033	Right-handed alpha
Helix 114	AM6	B	1040	1050	Right-handed alpha
Helix 115	AM7	B	1062	1081	Right-handed alpha
Helix 116	AM8	B	1085	1100	Right-handed alpha
Helix 117	AM9	B	1105	1123	Right-handed alpha
Helix 118	AN1	B	1126	1137	Right-handed alpha
Helix 119	AN2	B	1146	1151	Right-handed alpha
Helix 120	AN3	B	1152	1167	Right-handed alpha
Helix 121	AN4	B	1171	1176	Right-handed alpha
Helix 122	AN5	B	1178	1190	Right-handed alpha
Helix 123	AN6	B	1194	1209	Right-handed alpha
Helix 124	AN7	B	1210	1213	Right-handed 310
Helix 125	AN8	B	1217	1232	Right-handed alpha
Helix 126	AN9	B	1233	1247	Right-handed alpha
Helix 127	AO1	B	1258	1277	Right-handed alpha
Helix 128	AO2	B	1284	1299	Right-handed alpha
Helix 129	AO3	B	1303	1320	Right-handed alpha
Helix 130	AO4	B	1330	1344	Right-handed alpha
Helix 131	AO5	B	1349	1374	Right-handed alpha
Helix 132	AO6	B	1378	1391	Right-handed alpha
Helix 133	AO7	B	1394	1417	Right-handed alpha
Helix 134	AO8	C	30	40	Right-handed alpha
Helix 135	AO9	C	75	82	Right-handed alpha
Helix 136	AP1	C	97	99	Right-handed 310
Helix 137	AP2	C	100	114	Right-handed alpha
Helix 138	AP3	C	115	118	Right-handed 310
Helix 139	AP4	C	136	145	Right-handed alpha
Helix 140	AP5	C	146	149	Right-handed 310
Helix 141	AP6	C	166	182	Right-handed alpha
Helix 142	AP7	D	30	40	Right-handed alpha
Helix 143	AP8	D	75	82	Right-handed alpha
Helix 144	AP9	D	97	99	Right-handed 310
Helix 145	AQ1	D	100	113	Right-handed alpha
Helix 146	AQ2	D	126	130	Right-handed 310
Helix 147	AQ3	D	136	144	Right-handed alpha
Helix 148	AQ4	D	145	149	Right-handed 310
Helix 149	AQ5	D	165	182	Right-handed alpha

There are 8 sheets in PDB entry 8EZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	783	784	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	894	first strand
Strand 2	A	903	905	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	783	784	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	901	905	first strand
Strand 2	B	892	896	anti-parallel
Strand 3	B	983	984	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	57	58	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	19	24	parallel
Strand 4	C	88	91	parallel
Strand 5	C	122	123	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	125	127	parallel
Strand 3	C	157	158	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	57	first strand
Strand 2	D	64	69	anti-parallel
Strand 3	D	19	24	parallel
Strand 4	D	88	91	parallel
Strand 5	D	121	124	parallel
Strand 6	D	153	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EZJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EZJ