Analysis of interatomic Contacts of Structural Units in PDB entry:
8EZR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EZR entry

There are 2 chains in PDB entry 8EZR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 101
B
 MET 1ASP 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8EZR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 22Right-handed 310
Helix 2
AA2
A
54 59Right-handed alpha
Helix 3
AA3
A
63 74Right-handed alpha
Helix 4
AA4
A
80 89Right-handed alpha
Helix 5
AA5
B
55 59Right-handed 310
Helix 6
AA6
B
93 109Right-handed alpha
Helix 7
AA7
B
146 150Right-handed alpha
Helix 8
AA8
B
161 173Right-handed alpha
Helix 9
AA9
B
175 193Right-handed alpha
Helix 10
AB1
B
199 202Right-handed 310
Helix 11
AB2
B
222 227Right-handed alpha
Helix 12
AB3
B
246 252Right-handed alpha
Helix 13
AB4
B
262 286Right-handed alpha
Helix 14
AB5
B
290 308Right-handed alpha
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There are 3 sheets in PDB entry 8EZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
24 28anti-parallel
Strand 3
A
11 18anti-parallel
Strand 4
A
3 8anti-parallel
Strand 5
A
96 100anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
62 66anti-parallel
Strand 3
B
82 85anti-parallel
Strand 4
B
125 130anti-parallel
Strand 5
B
115 119anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
204 208anti-parallel
Strand 3
B
211 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il