Analysis of interatomic Contacts of Structural Units in PDB entry:
8F09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F09 entry

There are 2 chains in PDB entry 8F09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 166
B
 GLY 0LYS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8F09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 36Right-handed alpha
Helix 2
AA2
A
44 51Right-handed alpha
Helix 3
AA3
A
52 56Right-handed 310
Helix 4
AA4
A
82 93Right-handed alpha
Helix 5
AA5
A
103 111Right-handed alpha
Helix 6
AA6
B
25 36Right-handed alpha
Helix 7
AA7
B
45 49Right-handed alpha
Helix 8
AA8
B
52 56Right-handed 310
Helix 9
AA9
B
82 93Right-handed alpha
Helix 10
AB1
B
103 110Right-handed alpha
Helix 11
AB2
B
111 114Right-handed 310
Helix 12
AB3
B
136 138Right-handed 310
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There are 2 sheets in PDB entry 8F09. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
62 66parallel
Strand 3
A
40 43parallel
Strand 4
A
97 100parallel
Strand 5
A
2 9parallel
Strand 6
A
116 122parallel
Strand 7
A
158 165anti-parallel
Strand 8
A
140 148anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
62 66parallel
Strand 3
B
40 44parallel
Strand 4
B
97 100parallel
Strand 5
B
2 9parallel
Strand 6
B
116 122parallel
Strand 7
B
158 165anti-parallel
Strand 8
B
140 148anti-parallel
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