Analysis of interatomic Contacts of Structural Units in PDB entry:
8F0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F0I entry

There are 9 chains in PDB entry 8F0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 333	PRO 527
C	GLU 1	CYS 223
D	GLU 1	ARG 212
B	THR 333	PRO 527
E	GLU 1	CYS 223
F	GLU 1	ARG 212
G	THR 333	PRO 527
H	GLU 1	CYS 223
I	GLU 1	ARG 212

There are 36 helices in PDB entry 8F0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	338	343	Right-handed alpha
Helix 2	AA2	A	364	368	Right-handed 310
Helix 3	AA3	A	383	390	Right-handed 310
Helix 4	AA4	A	404	408	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	C	28	32	Right-handed 310
Helix 8	AA8	C	87	91	Right-handed 310
Helix 9	AA9	C	194	199	Right-handed alpha
Helix 10	AB1	D	79	83	Right-handed 310
Helix 11	AB2	D	122	127	Right-handed alpha
Helix 12	AB3	D	184	189	Right-handed alpha
Helix 13	AB4	B	338	343	Right-handed alpha
Helix 14	AB5	B	364	368	Right-handed 310
Helix 15	AB6	B	383	390	Right-handed 310
Helix 16	AB7	B	404	408	Right-handed 310
Helix 17	AB8	B	416	422	Right-handed alpha
Helix 18	AB9	B	438	443	Right-handed alpha
Helix 19	AC1	E	28	32	Right-handed 310
Helix 20	AC2	E	87	91	Right-handed 310
Helix 21	AC3	E	194	196	Right-handed 310
Helix 22	AC4	F	79	83	Right-handed 310
Helix 23	AC5	F	122	128	Right-handed alpha
Helix 24	AC6	F	184	189	Right-handed alpha
Helix 25	AC7	G	338	343	Right-handed alpha
Helix 26	AC8	G	364	368	Right-handed 310
Helix 27	AC9	G	383	390	Right-handed 310
Helix 28	AD1	G	404	408	Right-handed 310
Helix 29	AD2	G	416	422	Right-handed alpha
Helix 30	AD3	G	438	443	Right-handed alpha
Helix 31	AD4	H	28	32	Right-handed 310
Helix 32	AD5	H	87	91	Right-handed 310
Helix 33	AD6	H	194	198	Right-handed 310
Helix 34	AD7	I	79	83	Right-handed 310
Helix 35	AD8	I	122	127	Right-handed alpha
Helix 36	AD9	I	184	189	Right-handed alpha

There are 40 sheets in PDB entry 8F0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	402	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel
Strand 6	D	93	94	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	143	152	anti-parallel
Strand 3	C	183	191	anti-parallel
Strand 4	C	170	172	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	143	152	anti-parallel
Strand 3	C	183	191	anti-parallel
Strand 4	C	176	177	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	212	218	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	103	107	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	46	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	103	107	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	160	164	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	145	151	anti-parallel
Strand 3	D	192	199	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	402	anti-parallel
Strand 3	B	508	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel
Strand 6	F	93	94	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	114	118	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	142	152	anti-parallel
Strand 3	E	183	192	anti-parallel
Strand 4	E	170	172	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	142	152	anti-parallel
Strand 3	E	183	192	anti-parallel
Strand 4	E	176	177	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	201	207	anti-parallel
Strand 3	E	212	218	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	103	107	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	103	107	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	98	99	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	160	164	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	155	first strand
Strand 2	F	146	151	anti-parallel
Strand 3	F	192	198	anti-parallel
Strand 4	F	206	211	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	358	first strand
Strand 2	G	394	402	anti-parallel
Strand 3	G	508	516	anti-parallel
Strand 4	G	431	437	anti-parallel
Strand 5	G	376	380	anti-parallel
Strand 6	I	93	94	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	454	first strand
Strand 2	G	492	494	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	473	474	first strand
Strand 2	G	488	489	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	201	207	anti-parallel
Strand 3	H	212	218	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	103	107	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	103	107	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	98	99	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	115	119	first strand
Strand 2	I	130	140	anti-parallel
Strand 3	I	174	183	anti-parallel
Strand 4	I	160	164	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	155	first strand
Strand 2	I	145	151	anti-parallel
Strand 3	I	192	199	anti-parallel
Strand 4	I	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F0I