Analysis of interatomic Contacts of Structural Units in PDB entry:
8F0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F0K entry

There are 7 chains in PDB entry 8F0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLY 27	LYS 142
P	LYS 1	TYR 37
R	TYR 41	PHE 409
A	ASP 11	LEU 394
B	SER 2	ASN 340
G	SER 8	ARG 62
N	GLN 1	SER 128

There are 41 helices in PDB entry 8F0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	29	48	Right-handed alpha
Helix 2	AA2	E	52	57	Right-handed 310
Helix 3	AA3	E	58	80	Right-handed alpha
Helix 4	AA4	E	86	101	Right-handed alpha
Helix 5	AA5	E	115	120	Right-handed alpha
Helix 6	AA6	E	120	141	Right-handed alpha
Helix 7	AA7	P	4	6	Right-handed 310
Helix 8	AA8	P	7	19	Right-handed alpha
Helix 9	AA9	P	20	24	Right-handed 310
Helix 10	AB1	R	42	62	Right-handed alpha
Helix 11	AB2	R	131	135	Right-handed 310
Helix 12	AB3	R	137	173	Right-handed alpha
Helix 13	AB4	R	174	177	Right-handed 310
Helix 14	AB5	R	178	205	Right-handed alpha
Helix 15	AB6	R	208	215	Right-handed alpha
Helix 16	AB7	R	216	249	Right-handed alpha
Helix 17	AB8	R	259	268	Right-handed alpha
Helix 18	AB9	R	270	284	Right-handed alpha
Helix 19	AC1	R	287	291	Right-handed 310
Helix 20	AC2	R	295	297	Right-handed 310
Helix 21	AC3	R	298	330	Right-handed alpha
Helix 22	AC4	R	333	353	Right-handed alpha
Helix 23	AC5	R	354	359	Right-handed alpha
Helix 24	AC6	R	365	382	Right-handed alpha
Helix 25	AC7	R	382	392	Right-handed alpha
Helix 26	AC8	R	395	406	Right-handed alpha
Helix 27	AC9	A	12	40	Right-handed alpha
Helix 28	AD1	A	52	60	Right-handed alpha
Helix 29	AD2	A	233	239	Right-handed 310
Helix 30	AD3	A	265	278	Right-handed alpha
Helix 31	AD4	A	293	304	Right-handed alpha
Helix 32	AD5	A	312	316	Right-handed 310
Helix 33	AD6	A	331	350	Right-handed alpha
Helix 34	AD7	A	370	391	Right-handed alpha
Helix 35	AD8	B	3	26	Right-handed alpha
Helix 36	AD9	B	29	34	Right-handed alpha
Helix 37	AE1	G	9	24	Right-handed alpha
Helix 38	AE2	G	29	45	Right-handed alpha
Helix 39	AE3	G	46	48	Right-handed 310
Helix 40	AE4	N	28	32	Right-handed 310
Helix 41	AE5	N	87	91	Right-handed 310

There are 13 sheets in PDB entry 8F0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	71	72	first strand
Strand 2	R	85	86	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	75	76	first strand
Strand 2	R	81	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	90	94	first strand
Strand 2	R	107	111	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F0K