Analysis of interatomic Contacts of Structural Units in PDB entry:
8F0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F0P entry

There is 1 chain in PDB entry 8F0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 129TRP 1437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 8F0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 139Right-handed alpha
Helix 2
AA2
A
139 159Right-handed alpha
Helix 3
AA3
A
162 188Right-handed alpha
Helix 4
AA4
A
195 198Right-handed 310
Helix 5
AA5
A
199 218Right-handed alpha
Helix 6
AA6
A
223 241Right-handed 310
Helix 7
AA7
A
243 258Right-handed alpha
Helix 8
AA8
A
258 281Right-handed alpha
Helix 9
AA9
A
282 286Right-handed 310
Helix 10
AB1
A
302 311Right-handed alpha
Helix 11
AB2
A
312 316Right-handed 310
Helix 12
AB3
A
350 355Right-handed alpha
Helix 13
AB4
A
360 374Right-handed alpha
Helix 14
AB5
A
376 389Right-handed alpha
Helix 15
AB6
A
392 404Right-handed alpha
Helix 16
AB7
A
406 430Right-handed alpha
Helix 17
AB8
A
518 538Right-handed alpha
Helix 18
AB9
A
544 573Right-handed alpha
Helix 19
AC1
A
574 579Right-handed alpha
Helix 20
AC2
A
581 600Right-handed alpha
Helix 21
AC3
A
609 613Right-handed 310
Helix 22
AC4
A
614 619Right-handed alpha
Helix 23
AC5
A
619 624Right-handed alpha
Helix 24
AC6
A
624 637Right-handed alpha
Helix 25
AC7
A
637 670Right-handed alpha
Helix 26
AC8
A
671 674Right-handed 310
Helix 27
AC9
A
686 699Right-handed alpha
Helix 28
AD1
A
702 713Right-handed alpha
Helix 29
AD2
A
716 731Right-handed alpha
Helix 30
AD3
A
731 744Right-handed alpha
Helix 31
AD4
A
843 855Right-handed alpha
Helix 32
AD5
A
855 874Right-handed alpha
Helix 33
AD6
A
879 882Right-handed 310
Helix 34
AD7
A
883 913Right-handed alpha
Helix 35
AD8
A
913 919Right-handed alpha
Helix 36
AD9
A
920 942Right-handed alpha
Helix 37
AE1
A
947 953Right-handed alpha
Helix 38
AE2
A
954 957Right-handed 310
Helix 39
AE3
A
958 964Right-handed alpha
Helix 40
AE4
A
967 1005Right-handed alpha
Helix 41
AE5
A
1026 1033Right-handed alpha
Helix 42
AE6
A
1046 1059Right-handed alpha
Helix 43
AE7
A
1062 1073Right-handed alpha
Helix 44
AE8
A
1085 1087Right-handed 310
Helix 45
AE9
A
1088 1100Right-handed alpha
Helix 46
AF1
A
1105 1123Right-handed alpha
Helix 47
AF2
A
1130 1144Right-handed alpha
Helix 48
AF3
A
1158 1168Right-handed alpha
Helix 49
AF4
A
1169 1189Right-handed alpha
Helix 50
AF5
A
1195 1225Right-handed alpha
Helix 51
AF6
A
1226 1230Right-handed 310
Helix 52
AF7
A
1231 1258Right-handed alpha
Helix 53
AF8
A
1260 1268Right-handed alpha
Helix 54
AF9
A
1269 1280Right-handed 310
Helix 55
AG1
A
1282 1322Right-handed alpha
Helix 56
AG2
A
1338 1350Right-handed alpha
Helix 57
AG3
A
1354 1363Right-handed alpha
Helix 58
AG4
A
1383 1399Right-handed alpha
Helix 59
AG5
A
1401 1424Right-handed alpha
Helix 60
AG6
A
1426 1437Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8F0P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
341 344anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1012first strand
Strand 2
A
1036 1038anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il