Analysis of interatomic Contacts of Structural Units in PDB entry:
8F0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F0Q entry

There is 1 chain in PDB entry 8F0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 129TRP 1437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 8F0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 139Right-handed alpha
Helix 2
AA2
A
139 159Right-handed alpha
Helix 3
AA3
A
162 188Right-handed alpha
Helix 4
AA4
A
195 198Right-handed 310
Helix 5
AA5
A
199 218Right-handed alpha
Helix 6
AA6
A
227 241Right-handed 310
Helix 7
AA7
A
243 258Right-handed alpha
Helix 8
AA8
A
258 281Right-handed alpha
Helix 9
AA9
A
282 286Right-handed 310
Helix 10
AB1
A
302 312Right-handed alpha
Helix 11
AB2
A
313 316Right-handed 310
Helix 12
AB3
A
360 374Right-handed alpha
Helix 13
AB4
A
376 389Right-handed alpha
Helix 14
AB5
A
392 404Right-handed alpha
Helix 15
AB6
A
406 430Right-handed alpha
Helix 16
AB7
A
518 538Right-handed alpha
Helix 17
AB8
A
544 573Right-handed alpha
Helix 18
AB9
A
574 581Right-handed alpha
Helix 19
AC1
A
581 600Right-handed alpha
Helix 20
AC2
A
609 613Right-handed 310
Helix 21
AC3
A
614 619Right-handed alpha
Helix 22
AC4
A
619 624Right-handed alpha
Helix 23
AC5
A
624 637Right-handed alpha
Helix 24
AC6
A
637 670Right-handed alpha
Helix 25
AC7
A
671 674Right-handed 310
Helix 26
AC8
A
686 700Right-handed alpha
Helix 27
AC9
A
702 713Right-handed alpha
Helix 28
AD1
A
716 731Right-handed alpha
Helix 29
AD2
A
731 744Right-handed alpha
Helix 30
AD3
A
843 855Right-handed alpha
Helix 31
AD4
A
855 874Right-handed alpha
Helix 32
AD5
A
879 882Right-handed 310
Helix 33
AD6
A
883 919Right-handed alpha
Helix 34
AD7
A
920 943Right-handed alpha
Helix 35
AD8
A
947 952Right-handed alpha
Helix 36
AD9
A
953 957Right-handed 310
Helix 37
AE1
A
958 964Right-handed alpha
Helix 38
AE2
A
968 1005Right-handed alpha
Helix 39
AE3
A
1026 1033Right-handed alpha
Helix 40
AE4
A
1046 1059Right-handed alpha
Helix 41
AE5
A
1062 1072Right-handed alpha
Helix 42
AE6
A
1085 1087Right-handed 310
Helix 43
AE7
A
1088 1100Right-handed alpha
Helix 44
AE8
A
1102 1104Right-handed 310
Helix 45
AE9
A
1105 1123Right-handed alpha
Helix 46
AF1
A
1130 1145Right-handed alpha
Helix 47
AF2
A
1158 1169Right-handed alpha
Helix 48
AF3
A
1169 1189Right-handed alpha
Helix 49
AF4
A
1195 1225Right-handed alpha
Helix 50
AF5
A
1226 1230Right-handed 310
Helix 51
AF6
A
1231 1257Right-handed alpha
Helix 52
AF7
A
1261 1269Right-handed alpha
Helix 53
AF8
A
1270 1279Right-handed 310
Helix 54
AF9
A
1283 1321Right-handed alpha
Helix 55
AG1
A
1338 1350Right-handed alpha
Helix 56
AG2
A
1354 1363Right-handed alpha
Helix 57
AG3
A
1383 1399Right-handed alpha
Helix 58
AG4
A
1401 1424Right-handed alpha
Helix 59
AG5
A
1426 1437Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8F0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
341 344anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1012first strand
Strand 2
A
1036 1038anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il