Analysis of interatomic Contacts of Structural Units in PDB entry:
8F0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F0U entry

There are 3 chains in PDB entry 8F0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12GLN 359
D
 ALA 374GLN 448
a
 SER 28LEU 54
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8F0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
104 108Right-handed alpha
Helix 4
AA4
A
154 158Right-handed 310
Helix 5
AA5
A
169 173Right-handed 310
Helix 6
AA6
A
244 258Right-handed alpha
Helix 7
AA7
A
273 280Right-handed alpha
Helix 8
AA8
A
297 303Right-handed alpha
Helix 9
AA9
A
320 329Right-handed alpha
Helix 10
AB1
D
394 399Right-handed alpha
Helix 11
AB2
D
417 426Right-handed alpha
Helix 12
AB3
a
37 49Right-handed alpha
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There are 7 sheets in PDB entry 8F0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
34 36first strand
Strand 2
A
84 94anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
136 141anti-parallel
Strand 5
A
122 130anti-parallel
Strand 6
A
110 116anti-parallel
Strand 7
A
26 33anti-parallel
Strand 8
A
84 94anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
29 31first strand
Strand 2
A
221 229anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
198 201anti-parallel
Strand 5
A
176 187anti-parallel
Strand 6
A
163 168anti-parallel
Strand 7
A
213 215anti-parallel
Strand 8
A
221 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
355 356anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
309 313anti-parallel
Strand 4
A
316 317anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
309 313anti-parallel
Strand 4
A
336 343anti-parallel
Strand 5
A
346 353anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
375 378first strand
Strand 2
D
385 389anti-parallel
Strand 3
D
406 410anti-parallel
Strand 4
D
413 414anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
375 378first strand
Strand 2
D
385 389anti-parallel
Strand 3
D
406 410anti-parallel
Strand 4
D
432 438anti-parallel
Strand 5
D
441 447anti-parallel
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