Analysis of interatomic Contacts of Structural Units in PDB entry:
8F19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F19 entry

There are 2 chains in PDB entry 8F19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 1003
B
 GLU 9VAL 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8F19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
14 32Right-handed alpha
Helix 3
AA3
A
32 46Right-handed alpha
Helix 4
AA4
A
50 69Right-handed alpha
Helix 5
AA5
A
83 98Right-handed alpha
Helix 6
AA6
A
104 123Right-handed alpha
Helix 7
AA7
A
127 142Right-handed alpha
Helix 8
AA8
A
143 157Right-handed alpha
Helix 9
AA9
A
159 165Right-handed alpha
Helix 10
AB1
A
167 182Right-handed alpha
Helix 11
AB2
A
186 207Right-handed alpha
Helix 12
AB3
A
212 236Right-handed alpha
Helix 13
AB4
A
242 264Right-handed alpha
Helix 14
AB5
A
265 269Right-handed 310
Helix 15
AB6
A
270 292Right-handed alpha
Helix 16
AB7
A
302 322Right-handed alpha
Helix 17
AB8
A
327 343Right-handed alpha
Helix 18
AB9
A
345 355Right-handed alpha
Helix 19
AC1
A
355 364Right-handed alpha
Helix 20
AC2
A
371 383Right-handed alpha
Helix 21
AC3
A
384 402Right-handed alpha
Helix 22
AC4
A
405 421Right-handed alpha
Helix 23
AC5
A
430 448Right-handed alpha
Helix 24
AC6
A
452 470Right-handed alpha
Helix 25
AC7
A
476 494Right-handed alpha
Helix 26
AC8
A
497 513Right-handed alpha
Helix 27
AC9
A
516 521Right-handed alpha
Helix 28
AD1
A
522 542Right-handed alpha
Helix 29
AD2
A
547 561Right-handed alpha
Helix 30
AD3
A
570 587Right-handed alpha
Helix 31
AD4
A
591 606Right-handed alpha
Helix 32
AD5
A
610 632Right-handed alpha
Helix 33
AD6
A
633 636Right-handed 310
Helix 34
AD7
A
640 656Right-handed alpha
Helix 35
AD8
A
664 682Right-handed alpha
Helix 36
AD9
A
684 702Right-handed alpha
Helix 37
AE1
A
703 708Right-handed alpha
Helix 38
AE2
A
710 723Right-handed alpha
Helix 39
AE3
A
727 732Right-handed alpha
Helix 40
AE4
A
733 745Right-handed alpha
Helix 41
AE5
A
748 767Right-handed alpha
Helix 42
AE6
A
769 787Right-handed alpha
Helix 43
AE7
A
787 798Right-handed alpha
Helix 44
AE8
A
805 820Right-handed alpha
Helix 45
AE9
A
822 838Right-handed alpha
Helix 46
AF1
A
841 846Right-handed alpha
Helix 47
AF2
A
879 896Right-handed alpha
Helix 48
AF3
A
964 978Right-handed alpha
Helix 49
AF4
A
982 991Right-handed alpha
Helix 50
AF5
A
992 1003Right-handed alpha
Helix 51
AF6
B
24 35Right-handed alpha
Helix 52
AF7
B
77 82Right-handed 310
Helix 53
AF8
B
96 114Right-handed alpha
Helix 54
AF9
B
133 135Right-handed 310
Helix 55
AG1
B
136 145Right-handed alpha
Helix 56
AG2
B
160 172Right-handed alpha
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There are 3 sheets in PDB entry 8F19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 800first strand
Strand 2
A
803 804anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 849first strand
Strand 2
A
877 878anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 56first strand
Strand 2
B
59 68anti-parallel
Strand 3
B
12 18parallel
Strand 4
B
87 93parallel
Strand 5
B
119 124parallel
Strand 6
B
147 150parallel
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