Analysis of interatomic Contacts of Structural Units in PDB entry:
8F1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F1F entry

There are 14 chains in PDB entry 8F1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 77
B
 MET 1GLY 76
C
 MET 1GLY 76
a
 MET 1GLY 75
b
 MET 1GLY 76
c
 MET 1GLY 76
1
 GLN 2TRP 4
1
 TYR 6TYR 6
1
 THR 8THR 8
1
 VAL 10GLY 12
2
 GLN 2TRP 4
2
 TYR 6TYR 6
2
 THR 8THR 8
2
 VAL 10GLY 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8F1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
56 60Right-handed 310
Helix 4
AA4
B
22 35Right-handed alpha
Helix 5
AA5
B
37 39Right-handed 310
Helix 6
AA6
B
56 60Right-handed 310
Helix 7
AA7
C
22 35Right-handed alpha
Helix 8
AA8
C
37 39Right-handed 310
Helix 9
AA9
C
56 60Right-handed 310
Helix 10
AB1
a
22 35Right-handed alpha
Helix 11
AB2
a
37 41Right-handed 310
Helix 12
AB3
a
56 60Right-handed 310
Helix 13
AB4
b
22 35Right-handed alpha
Helix 14
AB5
b
37 39Right-handed 310
Helix 15
AB6
b
56 60Right-handed 310
Helix 16
AB7
c
22 35Right-handed alpha
Helix 17
AB8
c
37 39Right-handed 310
Helix 18
AB9
c
56 60Right-handed 310
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There are 8 sheets in PDB entry 8F1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
66 69parallel
Strand 4
A
43 45anti-parallel
Strand 5
A
48 49anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
1
3 5anti-parallel
Strand 3
1
8 10anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
12 16first strand
Strand 2
a
2 6anti-parallel
Strand 3
a
66 69parallel
Strand 4
a
43 45anti-parallel
Strand 5
a
48 49anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
71 72first strand
Strand 2
2
3 5anti-parallel
Strand 3
2
8 11anti-parallel
Strand 4
b
66 72parallel
Strand 5
b
2 6parallel
Strand 6
b
12 16anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
71 72first strand
Strand 2
2
3 5anti-parallel
Strand 3
2
8 11anti-parallel
Strand 4
b
66 72parallel
Strand 5
b
41 45anti-parallel
Strand 6
b
48 49anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
12 16first strand
Strand 2
c
2 6anti-parallel
Strand 3
c
66 71parallel
Strand 4
c
41 45anti-parallel
Strand 5
c
48 49anti-parallel
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