Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8F2E entry

There is 1 chain in PDB entry 8F2E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1665GLY 1945
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8F2E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1701 1704Right-handed 310
Helix 2
AA2
A
1705 1710Right-handed 310
Helix 3
AA3
A
1729 1748Right-handed alpha
Helix 4
AA4
A
1765 1784Right-handed alpha
Helix 5
AA5
A
1787 1790Right-handed 310
Helix 6
AA6
A
1791 1803Right-handed alpha
Helix 7
AA7
A
1807 1820Right-handed alpha
Helix 8
AA8
A
1829 1844Right-handed alpha
Helix 9
AA9
A
1861 1865Right-handed 310
Helix 10
AB1
A
1866 1876Right-handed alpha
Helix 11
AB2
A
1882 1889Right-handed alpha
Helix 12
AB3
A
1897 1902Right-handed alpha
Helix 13
AB4
A
1904 1918Right-handed alpha
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There are 4 sheets in PDB entry 8F2E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1670 1672first strand
Strand 2
A
1751 1755parallel
Strand 3
A
1722 1725parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1675 1679first strand
Strand 2
A
1682 1689anti-parallel
Strand 3
A
1692 1699anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1846 1848first strand
Strand 2
A
1922 1925parallel
Strand 3
A
1893 1896parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1855 1857first strand
Strand 2
A
1879 1881parallel
Strand 3
A
1938 1939anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il