Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F2K entry

There are 7 chains in PDB entry 8F2K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 26	PHE 510
B	ASN 26	PHE 510
C	ASN 26	PHE 510
D	PRO 8	GLU 476
E	PRO 8	GLU 476
F	PRO 8	GLU 476
G	ALA 1	SER 275

There are129 helices in PDB entry 8F2K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	84	Right-handed 310
Helix 2	AA2	A	102	106	Right-handed 310
Helix 3	AA3	A	152	159	Right-handed alpha
Helix 4	AA4	A	176	188	Right-handed alpha
Helix 5	AA5	A	188	193	Right-handed alpha
Helix 6	AA6	A	211	225	Right-handed alpha
Helix 7	AA7	A	227	229	Right-handed 310
Helix 8	AA8	A	241	262	Right-handed alpha
Helix 9	AA9	A	272	287	Right-handed alpha
Helix 10	AB1	A	299	309	Right-handed alpha
Helix 11	AB2	A	315	319	Right-handed 310
Helix 12	AB3	A	332	335	Right-handed 310
Helix 13	AB4	A	338	348	Right-handed alpha
Helix 14	AB5	A	355	361	Right-handed alpha
Helix 15	AB6	A	376	380	Right-handed 310
Helix 16	AB7	A	382	403	Right-handed alpha
Helix 17	AB8	A	404	409	Right-handed 310
Helix 18	AB9	A	413	431	Right-handed alpha
Helix 19	AC1	A	439	453	Right-handed alpha
Helix 20	AC2	A	461	478	Right-handed alpha
Helix 21	AC3	A	478	489	Right-handed alpha
Helix 22	AC4	A	492	510	Right-handed alpha
Helix 23	AC5	B	80	84	Right-handed 310
Helix 24	AC6	B	102	106	Right-handed 310
Helix 25	AC7	B	152	159	Right-handed alpha
Helix 26	AC8	B	176	188	Right-handed alpha
Helix 27	AC9	B	188	193	Right-handed alpha
Helix 28	AD1	B	211	225	Right-handed alpha
Helix 29	AD2	B	226	229	Right-handed 310
Helix 30	AD3	B	241	262	Right-handed alpha
Helix 31	AD4	B	272	287	Right-handed alpha
Helix 32	AD5	B	292	296	Right-handed 310
Helix 33	AD6	B	297	298	Right-handed 310
Helix 34	AD7	B	299	309	Right-handed alpha
Helix 35	AD8	B	315	319	Right-handed 310
Helix 36	AD9	B	332	335	Right-handed 310
Helix 37	AE1	B	338	346	Right-handed alpha
Helix 38	AE2	B	355	361	Right-handed alpha
Helix 39	AE3	B	376	380	Right-handed 310
Helix 40	AE4	B	382	390	Right-handed alpha
Helix 41	AE5	B	391	407	Right-handed alpha
Helix 42	AE6	B	413	431	Right-handed alpha
Helix 43	AE7	B	439	452	Right-handed alpha
Helix 44	AE8	B	453	458	Right-handed 310
Helix 45	AE9	B	459	461	Right-handed 310
Helix 46	AF1	B	462	478	Right-handed alpha
Helix 47	AF2	B	478	489	Right-handed alpha
Helix 48	AF3	B	492	510	Right-handed alpha
Helix 49	AF4	C	80	84	Right-handed 310
Helix 50	AF5	C	102	106	Right-handed 310
Helix 51	AF6	C	152	159	Right-handed alpha
Helix 52	AF7	C	176	188	Right-handed alpha
Helix 53	AF8	C	189	191	Right-handed 310
Helix 54	AF9	C	211	225	Right-handed alpha
Helix 55	AG1	C	227	229	Right-handed 310
Helix 56	AG2	C	241	263	Right-handed alpha
Helix 57	AG3	C	272	287	Right-handed alpha
Helix 58	AG4	C	292	296	Right-handed 310
Helix 59	AG5	C	297	298	Right-handed 310
Helix 60	AG6	C	299	309	Right-handed alpha
Helix 61	AG7	C	315	319	Right-handed 310
Helix 62	AG8	C	338	346	Right-handed alpha
Helix 63	AG9	C	355	361	Right-handed alpha
Helix 64	AH1	C	376	380	Right-handed 310
Helix 65	AH2	C	382	390	Right-handed alpha
Helix 66	AH3	C	391	407	Right-handed alpha
Helix 67	AH4	C	414	431	Right-handed alpha
Helix 68	AH5	C	439	452	Right-handed alpha
Helix 69	AH6	C	453	458	Right-handed 310
Helix 70	AH7	C	459	461	Right-handed 310
Helix 71	AH8	C	462	478	Right-handed alpha
Helix 72	AH9	C	478	489	Right-handed alpha
Helix 73	AI1	C	492	510	Right-handed alpha
Helix 74	AI2	D	88	92	Right-handed 310
Helix 75	AI3	D	138	145	Right-handed alpha
Helix 76	AI4	D	162	179	Right-handed alpha
Helix 77	AI5	D	190	204	Right-handed alpha
Helix 78	AI6	D	225	248	Right-handed alpha
Helix 79	AI7	D	257	273	Right-handed alpha
Helix 80	AI8	D	284	294	Right-handed alpha
Helix 81	AI9	D	319	327	Right-handed alpha
Helix 82	AJ1	D	336	342	Right-handed alpha
Helix 83	AJ2	D	359	364	Right-handed alpha
Helix 84	AJ3	D	364	392	Right-handed alpha
Helix 85	AJ4	D	397	414	Right-handed alpha
Helix 86	AJ5	D	421	426	Right-handed alpha
Helix 87	AJ6	D	433	446	Right-handed alpha
Helix 88	AJ7	D	453	457	Right-handed 310
Helix 89	AJ8	D	462	476	Right-handed alpha
Helix 90	AJ9	E	88	92	Right-handed 310
Helix 91	AK1	E	123	127	Right-handed 310
Helix 92	AK2	E	138	145	Right-handed alpha
Helix 93	AK3	E	162	175	Right-handed alpha
Helix 94	AK4	E	190	205	Right-handed alpha
Helix 95	AK5	E	225	246	Right-handed alpha
Helix 96	AK6	E	258	273	Right-handed alpha
Helix 97	AK7	E	284	294	Right-handed alpha
Helix 98	AK8	E	313	316	Right-handed 310
Helix 99	AK9	E	319	327	Right-handed alpha
Helix 100	AL1	E	336	342	Right-handed alpha
Helix 101	AL2	E	359	364	Right-handed alpha
Helix 102	AL3	E	364	392	Right-handed alpha
Helix 103	AL4	E	393	396	Right-handed 310
Helix 104	AL5	E	397	414	Right-handed alpha
Helix 105	AL6	E	418	420	Right-handed 310
Helix 106	AL7	E	421	426	Right-handed alpha
Helix 107	AL8	E	433	446	Right-handed alpha
Helix 108	AL9	E	453	458	Right-handed alpha
Helix 109	AM1	E	462	476	Right-handed alpha
Helix 110	AM2	F	88	92	Right-handed 310
Helix 111	AM3	F	138	145	Right-handed alpha
Helix 112	AM4	F	162	174	Right-handed alpha
Helix 113	AM5	F	190	204	Right-handed alpha
Helix 114	AM6	F	225	230	Right-handed alpha
Helix 115	AM7	F	231	246	Right-handed alpha
Helix 116	AM8	F	258	273	Right-handed alpha
Helix 117	AM9	F	284	294	Right-handed alpha
Helix 118	AN1	F	319	326	Right-handed alpha
Helix 119	AN2	F	327	329	Right-handed 310
Helix 120	AN3	F	336	342	Right-handed alpha
Helix 121	AN4	F	364	391	Right-handed alpha
Helix 122	AN5	F	392	396	Right-handed 310
Helix 123	AN6	F	397	414	Right-handed alpha
Helix 124	AN7	F	420	426	Right-handed alpha
Helix 125	AN8	F	433	446	Right-handed alpha
Helix 126	AN9	F	453	458	Right-handed 310
Helix 127	AO1	F	462	476	Right-handed alpha
Helix 128	AO2	G	2	42	Right-handed alpha
Helix 129	AO3	G	219	275	Right-handed alpha

There are 19 sheets in PDB entry 8F2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	30	37	anti-parallel
Strand 5	A	40	45	anti-parallel
Strand 6	A	72	77	anti-parallel
Strand 7	A	62	68	anti-parallel
Strand 8	D	10	17	anti-parallel
Strand 9	D	75	78	anti-parallel
Strand 10	D	36	39	anti-parallel
Strand 11	D	46	55	anti-parallel
Strand 12	D	58	63	anti-parallel
Strand 13	D	20	24	anti-parallel
Strand 14	D	10	17	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	127	130	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	231	236	parallel
Strand 3	A	202	208	parallel
Strand 4	A	265	270	parallel
Strand 5	A	322	330	parallel
Strand 6	A	167	171	parallel
Strand 7	A	350	354	parallel
Strand 8	A	373	374	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	68	first strand
Strand 2	B	53	57	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	30	37	anti-parallel
Strand 5	B	40	45	anti-parallel
Strand 6	B	72	77	anti-parallel
Strand 7	B	62	68	anti-parallel
Strand 8	E	10	17	anti-parallel
Strand 9	E	75	82	anti-parallel
Strand 10	E	35	40	anti-parallel
Strand 11	E	45	55	anti-parallel
Strand 12	E	58	63	anti-parallel
Strand 13	E	20	24	anti-parallel
Strand 14	E	10	17	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	101	first strand
Strand 2	B	127	130	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	231	236	parallel
Strand 3	B	202	208	parallel
Strand 4	B	265	270	parallel
Strand 5	B	322	330	parallel
Strand 6	B	168	171	parallel
Strand 7	B	350	354	parallel
Strand 8	B	373	374	anti-parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	69	first strand
Strand 2	C	53	57	anti-parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	30	37	anti-parallel
Strand 5	C	40	45	anti-parallel
Strand 6	C	72	77	anti-parallel
Strand 7	C	62	69	anti-parallel
Strand 8	F	10	17	anti-parallel
Strand 9	F	75	78	anti-parallel
Strand 10	F	36	40	anti-parallel
Strand 11	F	45	55	anti-parallel
Strand 12	F	58	63	anti-parallel
Strand 13	F	20	24	anti-parallel
Strand 14	F	10	17	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	127	130	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	231	236	parallel
Strand 3	C	201	208	parallel
Strand 4	C	265	270	parallel
Strand 5	C	322	330	parallel
Strand 6	C	312	313	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	231	236	parallel
Strand 3	C	201	208	parallel
Strand 4	C	265	270	parallel
Strand 5	C	322	330	parallel
Strand 6	C	168	171	parallel
Strand 7	C	350	354	parallel
Strand 8	C	373	374	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	114	116	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	215	221	parallel
Strand 3	D	182	189	parallel
Strand 4	D	250	255	parallel
Strand 5	D	303	309	parallel
Strand 6	D	152	156	parallel
Strand 7	D	331	334	parallel
Strand 8	D	354	355	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	D	147	148	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	87	first strand
Strand 2	E	113	116	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	215	220	parallel
Strand 3	E	182	187	parallel
Strand 4	E	251	256	parallel
Strand 5	E	304	311	parallel
Strand 6	E	152	157	parallel
Strand 7	E	331	334	parallel
Strand 8	E	354	355	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	147	148	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	87	first strand
Strand 2	F	113	116	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	215	220	parallel
Strand 3	F	182	187	parallel
Strand 4	F	251	256	parallel
Strand 5	F	304	311	parallel
Strand 6	F	152	157	parallel
Strand 7	F	331	334	parallel
Strand 8	F	354	355	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	147	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F2K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2K