Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8F2M entry

There are 4 chains in PDB entry 8F2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	ASN 440
F	PRO 2	THR 74
B	PRO 2	THR 74
C	LEU 12	SER 23

There are 16 helices in PDB entry 8F2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	14	18	Right-handed 310
Helix 2	AA2	D	44	52	Right-handed alpha
Helix 3	AA3	D	54	78	Right-handed alpha
Helix 4	AA4	D	83	85	Right-handed 310
Helix 5	AA5	D	111	118	Right-handed alpha
Helix 6	AA6	D	146	152	Right-handed alpha
Helix 7	AA7	D	157	192	Right-handed alpha
Helix 8	AA8	D	206	225	Right-handed alpha
Helix 9	AA9	D	243	245	Right-handed 310
Helix 10	AB1	D	253	259	Right-handed alpha
Helix 11	AB2	D	260	268	Right-handed alpha
Helix 12	AB3	D	271	275	Right-handed 310
Helix 13	AB4	F	4	15	Right-handed alpha
Helix 14	AB5	F	21	74	Right-handed alpha
Helix 15	AB6	B	4	17	Right-handed alpha
Helix 16	AB7	B	21	73	Right-handed alpha

There are 6 sheets in PDB entry 8F2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	300	309	parallel
Strand 3	D	324	332	anti-parallel
Strand 4	D	132	138	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	145	first strand
Strand 2	D	319	321	anti-parallel
Strand 3	D	313	314	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	282	first strand
Strand 2	D	247	252	parallel
Strand 3	D	292	296	anti-parallel
Strand 4	D	338	339	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	354	first strand
Strand 2	D	371	375	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	361	first strand
Strand 2	D	428	437	parallel
Strand 3	D	412	419	anti-parallel
Strand 4	D	384	386	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	368	first strand
Strand 2	D	401	403	anti-parallel
Strand 3	D	395	396	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8F2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8F2M